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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ldo ANP 78 kDa glucose-regulated protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ldo ANP78 kDa glucose-regulated protein / 1.014
5f1x ATP78 kDa glucose-regulated protein / 0.986
1nge ATPHeat shock cognate 71 kDa protein / 0.960
3ldl ATP78 kDa glucose-regulated protein / 0.929
1ngh ATPHeat shock cognate 71 kDa protein / 0.923
1ngi ANPHeat shock cognate 71 kDa protein / 0.904
1ngj ANPHeat shock cognate 71 kDa protein / 0.873
2qwl ADPHeat shock cognate 71 kDa protein / 0.838
5f2r ACP78 kDa glucose-regulated protein / 0.829
1ngd ADPHeat shock cognate 71 kDa protein / 0.820
1ngb ADPHeat shock cognate 71 kDa protein / 0.817
2qwn ADPHeat shock cognate 71 kDa protein / 0.804
3fe1 ADPHeat shock 70 kDa protein 6 / 0.801
1ngc ADPHeat shock cognate 71 kDa protein / 0.800
1atr ADPHeat shock cognate 71 kDa protein / 0.789
1ats ADPHeat shock cognate 71 kDa protein / 0.787
2qwq ADPHeat shock cognate 71 kDa protein / 0.777
2qwr ANPHeat shock cognate 71 kDa protein / 0.768
4k41 ATPActin, alpha skeletal muscle / 0.722
3hsc ADPHeat shock cognate 71 kDa protein / 0.715
4pkg ATPActin, alpha skeletal muscle / 0.713
1nlv ATPMajor actin / 0.711
1qz5 ATPActin, alpha skeletal muscle / 0.709
4b9q ATPChaperone protein DnaK / 0.705
1s22 ATPActin, alpha skeletal muscle / 0.704
1c0f ATPMajor actin / 0.703
3eku ATPActin-5C / 0.703
3m6g ATPActin, alpha skeletal muscle / 0.702
4h5t ADPHeat shock cognate 71 kDa protein / 0.701
1wua ATPActin, alpha skeletal muscle / 0.695
3chw ATPMajor actin / 0.691
4pl8 ATPActin, alpha skeletal muscle / 0.688
3w3d ATPActin, gamma-enteric smooth muscle / 0.687
4b1v ATPActin, alpha skeletal muscle / 0.687
2p9k ATPActin-related protein 2 / 0.677
1t44 ATPActin, alpha skeletal muscle / 0.672
1dej ATPMajor actin / 0.669
3el2 ATPActin-5C / 0.669
3wt0 ATPCell division protein FtsA / 0.663
4ci6 ATPActin / 0.662
2q97 ATPActin, alpha skeletal muscle / 0.660
3eks ATPActin-5C / 0.660
3ule ATPActin-related protein 2 / 0.660
2v51 ATPActin, alpha skeletal muscle / 0.658
3mn7 ATPActin-5C / 0.656
3a5o ATPMajor actin / 0.653