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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3lbf SAH Protein-L-isoaspartate O-methyltransferase 2.1.1.77

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3lbf SAHProtein-L-isoaspartate O-methyltransferase 2.1.1.77 1.020
4l7v SAHProtein-L-isoaspartate O-methyltransferase / 0.856
1kr5 SAHProtein-L-isoaspartate(D-aspartate) O-methyltransferase 2.1.1.77 0.680
2pwy SAHtRNA (adenine(58)-N(1))-methyltransferase TrmI 2.1.1.220 0.674
1i9g SAMtRNA (adenine(58)-N(1))-methyltransferase TrmI / 0.667
4c05 SAHProtein arginine N-methyltransferase 6 / 0.661
2yqz SAMUncharacterized protein / 0.658
3a4t SFGtRNA (cytosine(48)-C(5))-methyltransferase 2.1.1 0.653
4poo SAMPutative RNA methylase / 0.652