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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l9m L9M cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l9m L9McAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.242
3l9n L9NcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.944
2jdv L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.863
2jds L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.857
3l9l L9LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.796
2uzu L20cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.754
3kkv B99cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.752
2uzv SS5cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.736
2uzw SS4cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.736
4agu D15Cyclin-dependent kinase-like 1 / 0.713
2oh0 2PYcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.708
2c3k ABOSerine/threonine-protein kinase Chk1 2.7.11.1 0.703
1pmv 537Mitogen-activated protein kinase 10 2.7.11.24 0.702
2uzt SS3cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.693
2vti LZ3Cyclin-dependent kinase 2 2.7.11.22 0.683
3pcf FHBProtocatechuate 3,4-dioxygenase beta chain 1.13.11.3 0.678
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.675
3rgf BAXCyclin-dependent kinase 8 2.7.11.22 0.673
2qkr IXMCdc2-like CDK2/CDC28 like protein kinase / 0.672
3v8s 0HDRho-associated protein kinase 1 2.7.11.1 0.672
4ks8 B49Serine/threonine-protein kinase PAK 6 2.7.11.1 0.669
1ydt IQBcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.668
3hzt J60Calmodulin-like domain protein kinase isoform 3 / 0.667
3ti1 B49Cyclin-dependent kinase 2 2.7.11.22 0.666
1b6l PI4Gag-Pol polyprotein 3.4.23.16 0.661
1rej B1LcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
2jdt I5ScAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.661
3bgq VX2Serine/threonine-protein kinase pim-1 2.7.11.1 0.659
4mpe PV8[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial 2.7.11.2 0.659
4e20 0MYNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.658
1bx6 BA1cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
4dgo 0JWCasein kinase II subunit alpha 2.7.11.1 0.653
4qmz B49Serine/threonine-protein kinase 24 2.7.11.1 0.652
2c3i IYZSerine/threonine-protein kinase pim-1 2.7.11.1 0.651
2gdo 12CSerine/threonine-protein kinase Chk1 2.7.11.1 0.651
3mv5 XFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.651
4i1r LZUMucosa-associated lymphoid tissue lymphoma translocation protein 1 3.4.22 0.650