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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l77 NJP Short-chain alcohol dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity
Align
3l77 NJPShort-chain alcohol dehydrogenase / 1.445
3tn7 NJPShort-chain alcohol dehydrogenase / 1.420
3rku NAPNADP-dependent 3-hydroxy acid dehydrogenase / 1.044
1xg5 NAPDehydrogenase/reductase SDR family member 11 / 1.039
2jah NDPClavaldehyde dehydrogenase / 1.018
3p19 NDPPutative blue fluorescent protein / 0.998
4bmv NAPShort-chain dehydrogenase / 0.976
4dc0 NDPPutative ketoacyl reductase 1.3.1 0.924
3sju NDPKeto reductase / 0.905
3tsc NADUncharacterized protein / 0.905
4z3d NDPCarbonyl reductase [NADPH] 1 1.1.1.184 0.904
1edo NAP3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplastic 1.1.1.100 0.894
4fn4 NADShort chain dehydrogenase / 0.883
3ai2 NDPNADPH-sorbose reductase / 0.879
5ig2 NADShort-chain dehydrogenase/reductase SDR / 0.879
1ipe NDPTropinone reductase 2 1.1.1.236 0.877
1x7g NAPPutative ketoacyl reductase 1.3.1 0.876
3sx2 NADUncharacterized protein / 0.875
3qrw NDPPutative ketoacyl reductase 1.3.1 0.872
2gdz NAD15-hydroxyprostaglandin dehydrogenase [NAD(+)] 1.1.1.141 0.870
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.870
1fdu NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.868
4hwk NAPSepiapterin reductase 1.1.1.153 0.867
3d3w NAPL-xylulose reductase 1.1.1.10 0.866
3o26 NDPSalutaridine reductase / 0.864
3pgx NADUncharacterized NAD-dependent oxidoreductase MAP_4146 / 0.863
1oaa NAPSepiapterin reductase 1.1.1.153 0.862
4j7x NAPSepiapterin reductase 1.1.1.153 0.860
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.859
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.858
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.857
3qwf NAP17beta-hydroxysteroid dehydrogenase / 0.856
1e3w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.850
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.850
3gy0 NAPNAD(P)-dependent oxidoreductase / 0.849
3w8f NAD3-hydroxybutyrate dehydrogenase / 0.849
2dkn NAI3-alpha-hydroxysteroid dehydrogenase / 0.844
3s55 NADPutative short-chain dehydrogenase/reductase / 0.843
1e6w NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.841
1pr9 NAPL-xylulose reductase 1.1.1.10 0.839
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.839
4fj1 NAP17beta-hydroxysteroid dehydrogenase / 0.832
4fj2 NAP17beta-hydroxysteroid dehydrogenase / 0.831
1vl8 NAPOxidoreductase, short chain dehydrogenase/reductase family / 0.829
1w4z NAPPutative ketoacyl reductase 1.3.1 0.829
3w8e NAD3-hydroxybutyrate dehydrogenase / 0.829
4yai NAIC alpha-dehydrogenase / 0.828
1cyd NDPCarbonyl reductase [NADPH] 2 1.1.1.184 0.827
4fj0 NAP17beta-hydroxysteroid dehydrogenase / 0.827
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.824
5jla NADPutative short-chain dehydrogenase/reductase / 0.823
2bd0 NAPSepiapterin reductase / 0.818
5d2e NAPMlnE / 0.816
3iah NAPPutative oxoacyl-(Acyl carrier protein) reductase / 0.814
4j7u NAPSepiapterin reductase 1.1.1.153 0.814
2o23 NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.813
4tqg NDPPutative dTDP-d-glucose 4 6-dehydratase / 0.813
2d1y NADOxidoreductase, short-chain dehydrogenase/reductase family / 0.811
4i5e NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.811
1g0n NDPTetrahydroxynaphthalene reductase 1.1.1.252 0.810
1nff NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.809
1sny NAPLD36273p / 0.809
4yag NAIC alpha-dehydrogenase / 0.808
3rj9 NADAlcohol dehydrogenase 1.1.1.1 0.805
4hp8 NAP2-deoxy-D-gluconate 3-dehydrogenase / 0.803
1n5d NDPCarbonyl reductase [NADPH] 1 / 0.798
4fc7 NAPPeroxisomal 2,4-dienoyl-CoA reductase 1.3.1.34 0.797
2yut NAPPutative short-chain oxidoreductase / 0.796
4gh5 NADShort-chain dehydrogenase/reductase SDR / 0.796
1bdb NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase / 0.793
2ztm NADD(-)-3-hydroxybutyrate dehydrogenase / 0.791
1ae1 NAPTropinone reductase 1 / 0.789
1nfr NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.786
4imp NDPPolyketide synthase extender modules 3-4 / 0.786
4kwh NAPReductase homolog / 0.784
1w8d NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.783
3ai3 NDPNADPH-sorbose reductase / 0.783
2c29 NAPDihydroflavonol 4-reductase / 0.782
4b79 NADProbable short-chain dehydrogenase / 0.782
3g49 NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.781
4qec NAPElxO / 0.780
1x7h NDPPutative ketoacyl reductase 1.3.1 0.777
4o0l NDPNADPH-dependent 3-quinuclidinone reductase / 0.777
2b4q NAPRhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.776
1u7t TDT3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.775
3ak4 NADNADH-dependent quinuclidinone reductase / 0.775
2wsb NADGalactitol dehydrogenase / 0.774
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.772
1xse NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.770
3nug NADPyridoxal 4-dehydrogenase 1.1.1.107 0.770
4eso NAPPutative oxidoreductase / 0.770
1xkq NDPUncharacterized protein / 0.766
2nnl NAPDihydroflavonol 4-reductase 1.1.1.219 0.766
3ruc NADUDP-N-acetylglucosamine 4-epimerase / 0.766
4wec NADShort chain dehydrogenase / 0.763
4nbt NAD3-oxoacyl-[acyl-carrier-protein] reductase / 0.762
1e3s NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.760
1iy8 NADLevodione reductase / 0.756
4bms NAPAlclohol dehydrogenase/short-chain dehydrogenase / 0.755
4hxy NDPPlm1 / 0.755
3u4c NDPNADPH-dependent reductase BacG / 0.753
5b1y NDP3-oxoacyl-[acyl-carrier-protein] reductase / 0.750
2q2q NADBeta-D-hydroxybutyrate dehydrogenase / 0.749
4dbz NDPPutative ketoacyl reductase 1.3.1 0.748
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.746
5js6 NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.746
3uce NDPDehydrogenase / 0.745
1h5q NAPNADP-dependent mannitol dehydrogenase 1.1.1.138 0.743
2q1w NADPutative nucleotide sugar epimerase/ dehydratase / 0.743
1gco NADGlucose 1-dehydrogenase 1.1.1.47 0.742
1gee NADGlucose 1-dehydrogenase 1.1.1.47 0.742
3wds NADNADH-dependent quinuclidinone reductase / 0.742
3vdq NAD3-hydroxybutyrate dehydrogenase / 0.741
4qed NAPElxO / 0.739
2y99 NADCis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase 1.3.1.56 0.738
1ek5 NADUDP-glucose 4-epimerase / 0.737
3tox NAPPutative oxidoreductase / 0.737
3uic NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.736
3a28 NADL-2,3-butanediol dehydrogenase 1.1.1.76 0.733
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.729
2ztv NADD(-)-3-hydroxybutyrate dehydrogenase / 0.727
4is3 NAD3alpha-hydroxy bile acid-CoA-ester 3-dehydrogenase 2 1.17.98.1 0.726
1qyv NAPEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.725
1u7t NAD3-hydroxyacyl-CoA dehydrogenase type-2 1.1.1.35 0.724
2c59 NADGDP-mannose 3,5-epimerase 5.1.3.18 0.723
4k6f NAPPutative Acetoacetyl-CoA reductase / 0.723
4pvd NDPNADPH-dependent methylglyoxal reductase GRE2 / 0.722
4m87 NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.721
2zat NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.720
1nai NADUDP-glucose 4-epimerase 5.1.3.2 0.719
2hrb NAPCarbonyl reductase [NADPH] 3 1.1.1.184 0.719
5jyd NADShort chain dehydrogenase / 0.718
3ru9 NADUDP-N-acetylglucosamine 4-epimerase / 0.717
2b37 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.715
2bgm NAJSecoisolariciresinol dehydrogenase 1.1.1.331 0.710
2b35 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.707
2rbe NDPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.707
2dte NAIGlucose 1-dehydrogenase related protein / 0.706
1mg5 NAIAlcohol dehydrogenase 1.1.1.1 0.705
1zem NADXylitol dehydrogenase / 0.705
4lis NADUDP-glucose 4-epimerase (Eurofung) / 0.705
2yy7 NADL-threonine dehydrogenase / 0.704
4fw8 NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.701
1fk8 NAD3-alpha-hydroxysteroid dehydrogenase/carbonyl reductase 1.1.1.50 0.700
1u28 NAPNAD(P) transhydrogenase subunit beta 1.6.1.2 0.700
3ru7 NADUDP-N-acetylglucosamine 4-epimerase / 0.699
3ruh NADUDP-N-acetylglucosamine 4-epimerase / 0.696
3sj7 NDP3-oxoacyl-(Acyl-carrier-protein) reductase, putative / 0.696
3r3s NADPutative oxidoreductase / 0.695
4zju NADEnoyl-[acyl-carrier-protein] reductase [NADH] / 0.695
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.694
2wdz NADGalactitol dehydrogenase / 0.694
4hbg NDP3-oxoacyl-[acyl-carrier-protein] reductase 1.1.1.100 0.694
4u7w NDPMxaA / 0.694
1hdo NAPFlavin reductase (NADPH) / 0.693
4o1m NADEnoyl-acyl carrier reductase / 0.692
1b15 NAEAlcohol dehydrogenase 1.1.1.1 0.691
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.691
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.691
2idz ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.690
1rpn NDPGDP-mannose 4,6-dehydratase / 0.689
3f1k NAPUncharacterized oxidoreductase YciK 1 0.689
1wvg APRCDP-glucose 4,6-dehydratase 4.2.1.45 0.688
2ag5 NAD3-hydroxybutyrate dehydrogenase type 2 / 0.687
4nbu NAI3-oxoacyl-(Acyl-carrier-protein) reductase / 0.687
1enz NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
2ntj P1HEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.685
3o4r NAPDehydrogenase/reductase SDR family member 4 1.1.1.184 0.685
3rud NADUDP-N-acetylglucosamine 4-epimerase / 0.685
5j23 A2RPutative 2-hydroxyacid dehydrogenase / 0.685
1i3l NADUDP-glucose 4-epimerase / 0.684
3geg NADShort-chain dehydrogenase/reductase SDR / 0.684
3ndr NADPyridoxal 4-dehydrogenase 1.1.1.107 0.684
3uxy NADShort-chain dehydrogenase/reductase SDR / 0.683
5jy1 NADPutative short-chain dehydrogenase/reductase / 0.683
4dqu NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.682
3a1n NADNDP-sugar epimerase / 0.681
3ruf NADUDP-N-acetylglucosamine 4-epimerase / 0.681
4yaf 2AMNADPH--cytochrome P450 reductase / 0.681
5jsf NAD17-beta-hydroxysteroid dehydrogenase 14 1.1.1 0.680
3mje NDPAmphB / 0.679
4xyb NDPFormate dehydrogenase / 0.679
1w73 NAP2,4-dienoyl-CoA reductase, mitochondrial 1.3.1.34 0.678
2ieb ZIDEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.678
2ztu NADD(-)-3-hydroxybutyrate dehydrogenase / 0.678
1ahh NAD7-alpha-hydroxysteroid dehydrogenase 1.1.1.159 0.674
3lqf NADGalactitol dehydrogenase / 0.674
3rua NADUDP-N-acetylglucosamine 4-epimerase / 0.674
4qfy DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.673
5cpb NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.673
1eny NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
3oey NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.672
4c7k NAPCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.672
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.672
5lc1 NADL-threonine 3-dehydrogenase / 0.672
3a9w NADNDP-sugar epimerase / 0.671
3oew NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.670
5bt9 NAP3-oxoacyl-(Acyl-carrier-protein) reductase / 0.670
2v6g NAP3-oxo-Delta(4,5)-steroid 5-beta-reductase / 0.669
3of2 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.669
4b4o NDPEpimerase family protein SDR39U1 / 0.669
3lu1 NADUDP-N-acetylglucosamine 4-epimerase / 0.668
3rue NADUDP-N-acetylglucosamine 4-epimerase / 0.667
4oxy NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.667
3baz NAPHydroxyphenylpyruvate reductase 1.1.1.237 0.665
4trn NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.665
4to4 DGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.664
2aqk NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.662
4egb NADdTDP-glucose 4,6-dehydratase / 0.662
3a4v NADNDP-sugar epimerase / 0.661
4ejm NAPPutative zinc-binding dehydrogenase / 0.661
1kvr NADUDP-glucose 4-epimerase 5.1.3.2 0.660
2vq3 NAPMetalloreductase STEAP3 / 0.660
3aut NAIGlucose 1-dehydrogenase 4 1.1.1.47 0.659
3orf NADDihydropteridine reductase 1.5.1.34 0.659
3wmx NADNAD dependent epimerase/dehydratase / 0.658
1vrw NAIEnoyl-ACP reductase / 0.657
3icp NADNAD-dependent epimerase/dehydratase / 0.657
1dap NDPMeso-diaminopimelate D-dehydrogenase 1.4.1.16 0.656
3o03 NAPDehydrogenase with different specificities (Related to short-chain alcohol dehydrogenase) / 0.656
2hsd NAD3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase 1.1.1.53 0.655
1sby NADAlcohol dehydrogenase 1.1.1.1 0.654
2b36 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.654
3oab DSTGeranyl diphosphate synthase large subunit / 0.654
4dmm NAP3-oxoacyl-[acyl-carrier-protein] reductase / 0.654
2x6t NAPADP-L-glycero-D-manno-heptose-6-epimerase / 0.653
3ajr NADNDP-sugar epimerase / 0.653
4cql NADEstradiol 17-beta-dehydrogenase 8 1.1.1.62 0.653
5a03 NDPGlucose-fructose oxidoreductase / 0.653
1n2s NAIdTDP-4-dehydrorhamnose reductase 1.1.1.133 0.652
1p44 NADEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.652
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.652
5a05 NDPGlucose-fructose oxidoreductase / 0.652
5aq1 NDPGlucose-6-phosphate 1-dehydrogenase / 0.652
1b2l NDCAlcohol dehydrogenase 1.1.1.1 0.651
1dir NADDihydropteridine reductase 1.5.1.34 0.651
2gq3 COAMalate synthase G / 0.651
4dre NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.651
2p5y NADUDP-glucose 4-epimerase / 0.650
4dti NAIEnoyl-[acyl-carrier-protein] reductase [NADH] 1.3.1.9 0.650