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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l3r OAG Dihydrofolate reductase 1.5.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l3r OAGDihydrofolate reductase 1.5.1.3 0.927
3gyf 51PDihydrofolate reductase 1.5.1.3 0.730
1s3u TQDDihydrofolate reductase 1.5.1.3 0.702
1mvt DTMDihydrofolate reductase 1.5.1.3 0.694
1s3v TQDDihydrofolate reductase 1.5.1.3 0.686
1hfp MOTDihydrofolate reductase 1.5.1.3 0.678
3oaf OAGDihydrofolate reductase 1.5.1.3 0.678
1hfr MOTDihydrofolate reductase 1.5.1.3 0.677
4ixg IXGDihydrofolate reductase 1.5.1.3 0.672
3k45 51PDihydrofolate reductase 1.5.1.3 0.671
1s3y TQTDihydrofolate reductase 1.5.1.3 0.656
3nxo D2BDihydrofolate reductase 1.5.1.3 0.656
3k47 D09Dihydrofolate reductase 1.5.1.3 0.655