Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l1s Z92 Glycogen synthase kinase-3 beta 2.7.11.26

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l1s Z92Glycogen synthase kinase-3 beta 2.7.11.26 1.040
4afj SJJGlycogen synthase kinase-3 beta 2.7.11.26 0.707
4elg 52JDihydrofolate reductase / 0.664
2w7x D1ASerine/threonine-protein kinase Chk2 2.7.11.1 0.660
3ti1 B49Cyclin-dependent kinase 2 2.7.11.22 0.656