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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l0t INN Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l0t INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.948
3kme INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.901
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.814
1mnc PLHNeutrophil collagenase 3.4.24.34 0.707
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.707
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 0.691
3m6p BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.691
2jih 097A disintegrin and metalloproteinase with thrombospondin motifs 1 3.4.24 0.686
1rm8 BATMatrix metalloproteinase-16 3.4.24 0.683
3pn4 BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.678
3u04 BB2Peptide deformylase / 0.678
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 0.676
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.675
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 0.675
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.663
3hy9 098A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.662
3m6q BB2Peptide deformylase 1B, chloroplastic/mitochondrial 3.5.1.88 0.659
4dd8 BATDisintegrin and metalloproteinase domain-containing protein 8 3.4.24 0.659
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.657
1lru BB2Peptide deformylase 3.5.1.88 0.654