sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3l0l | HC3 | Nuclear receptor ROR-gamma |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3l0l | HC3 | Nuclear receptor ROR-gamma | / | 1.329 | |
| 1s0x | C3S | Nuclear receptor ROR-alpha | / | 0.805 | |
| 1n83 | CLR | Nuclear receptor ROR-alpha | / | 0.745 | |
| 1g7u | PEP | 2-dehydro-3-deoxyphosphooctonate aldolase | 2.5.1.55 | 0.744 | |
| 4e5i | 0N9 | Polymerase acidic protein | / | 0.744 | |
| 3gki | CLR | Niemann-Pick C1 protein | / | 0.723 | |
| 3kyt | HC2 | Nuclear receptor ROR-gamma | / | 0.692 | |
| 1q20 | PLO | Sulfotransferase family cytosolic 2B member 1 | 2.8.2.2 | 0.678 | |
| 2hzq | STR | Apolipoprotein D | / | 0.666 | |
| 4nky | 3QZ | Steroid 17-alpha-hydroxylase/17,20 lyase | / | 0.663 | |
| 1zhz | ERG | Oxysterol-binding protein homolog 4 | / | 0.662 | |
| 2jn3 | JN3 | Fatty acid-binding protein, liver | / | 0.661 | |
| 4a81 | DXC | Major pollen allergen Bet v 1-A | / | 0.661 | |
| 4e5f | 0N7 | Polymerase acidic protein | / | 0.660 | |
| 1ya3 | STR | Mineralocorticoid receptor | / | 0.654 | |
| 4j24 | EST | Estrogen receptor beta | / | 0.654 |