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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3l03 4OH Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3l03 4OHEstrogen receptor / 1.132
2yja ESTEstrogen receptor / 1.102
4pxm ESTEstrogen receptor / 1.084
2qgt EEDEstrogen receptor / 1.069
3uud ESTEstrogen receptor / 1.069
5dxg ESTEstrogen receptor / 1.064
5hyr ESTEstrogen receptor / 1.059
3q95 ESLEstrogen receptor / 1.035
1gwr ESTEstrogen receptor / 1.018
2b1z 17MEstrogen receptor / 1.001
5dx3 ESTEstrogen receptor / 0.989
3oll ESTEstrogen receptor beta / 0.972
2yat EEUEstrogen receptor / 0.946
4j26 ESTEstrogen receptor beta / 0.941
3ols ESTEstrogen receptor beta / 0.933
4j24 ESTEstrogen receptor beta / 0.923
2j7x ESTEstrogen receptor beta / 0.921
2ocf ESTEstrogen receptor / 0.899
2pog WSTEstrogen receptor / 0.759
1zky 689Estrogen receptor / 0.757
2q70 DC8Estrogen receptor / 0.757
1lhu ESTSex hormone-binding globulin / 0.714
1x7r GENEstrogen receptor / 0.705
3s79 ASDAromatase 1.14.14.14 0.694
2qe4 JJ3Estrogen receptor / 0.692
4ivy 1GTEstrogen receptor / 0.688
4ofr DHTAndrogen receptor / 0.687
4pp6 STLEstrogen receptor / 0.687
3gki CLRNiemann-Pick C1 protein / 0.686
2g5o DRQEstrogen receptor / 0.684
3bej MUFBile acid receptor / 0.683
2pnu ENMAndrogen receptor / 0.679
3bur TES3-oxo-5-beta-steroid 4-dehydrogenase / 0.679
2d06 ESTSulfotransferase 1A1 2.8.2.1 0.677
4iv4 1GSEstrogen receptor / 0.674
1fdt ESTEstradiol 17-beta-dehydrogenase 1 1.1.1.62 0.673
2piq DHTAndrogen receptor / 0.670
3gyu DL7Nuclear hormone receptor of the steroid/thyroid hormone receptors superfamily / 0.667
3owl 19ECasein kinase II subunit alpha 2.7.11.1 0.663
4e5f 0N7Polymerase acidic protein / 0.662
4e5i 0N9Polymerase acidic protein / 0.660
3cas ASD3-oxo-5-beta-steroid 4-dehydrogenase / 0.659
1gwq ZTWEstrogen receptor / 0.658
3cot STR3-oxo-5-beta-steroid 4-dehydrogenase / 0.656
1yye 196Estrogen receptor beta / 0.655
2w8y NDRProgesterone receptor / 0.653
1f5f DHTSex hormone-binding globulin / 0.652
3vhu SNLMineralocorticoid receptor / 0.650