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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kzo AN0 N-acetylornithine carbamoyltransferase 2.1.3.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kzo AN0N-acetylornithine carbamoyltransferase 2.1.3.9 0.852
3l05 SN0N-acetylornithine carbamoyltransferase 2.1.3.9 0.735
3l06 SN0N-acetylornithine carbamoyltransferase 2.1.3.9 0.734
3l04 SN0N-acetylornithine carbamoyltransferase 2.1.3.9 0.723
2g7m AN0Ornithine carbamoyltransferase / 0.677
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.654
2opn SUFFarnesyl pyrophosphate synthase 2.5.1.10 0.652