Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kxw 1ZZ Saframycin Mx1 synthetase B

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kxw 1ZZSaframycin Mx1 synthetase B / 1.284
3lnv 1ZZSaframycin Mx1 synthetase B / 1.020
4rvo ADPPhenylacetate-coenzyme A ligase / 0.699
4oxi GAPEnterobactin synthetase component F-related protein / 0.695
4r1l ADPPhenylacetate-coenzyme A ligase / 0.687
3lgx ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.684
3fce ATPD-alanine--poly(phosphoribitol) ligase subunit 1 / 0.680
4g36 SLULuciferin 4-monooxygenase 1.13.12.7 0.665
5ifi PRXAcetyl-coenzyme A synthetase / 0.664
5bsm ATP4-coumarate--CoA ligase 2 6.2.1.12 0.659
3gkj HC3Niemann-Pick C1 protein / 0.657
4lch 1WNUDP-3-O-acyl-N-acetylglucosamine deacetylase / 0.650