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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kqb LGJ Coagulation factor X 3.4.21.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kqb LGJCoagulation factor X 3.4.21.6 1.094
3kqe LGMCoagulation factor X 3.4.21.6 0.837
2g00 4QCCoagulation factor X 3.4.21.6 0.784
1lpk CBBCoagulation factor X 3.4.21.6 0.715
1lqd CMICoagulation factor X 3.4.21.6 0.682
2vvc LZFCoagulation factor X 3.4.21.6 0.666
2p3u 663Coagulation factor X 3.4.21.6 0.665
2rtk GLLStreptavidin / 0.657