Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3koq FMN Putative nitroreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3koq FMNPutative nitroreductase / 1.223
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.963
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.961
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.959
2wzw FMNNitroreductase NfnB / 0.955
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.950
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.950
2wzv FMNNitroreductase NfnB / 0.940
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.937
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.923
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.919
4qly FMNEnone reductase CLA-ER / 0.919
3e39 FMNNitroreductase / 0.916
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.912
3ge6 FMNNitroreductase / 0.910
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.905
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.898
3pxv FMNNitroreductase / 0.893
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.879
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.878
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.862
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.853
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.850
3of4 FMNNitroreductase / 0.834
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.832
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.826
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.824
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.823
3eo8 FMNPutative nitroreductase / 0.812
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.806
4ttc FMNIodotyrosine deiodinase 1 / 0.786
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.779
2fre FMNNAD(P)H-flavin oxidoreductase / 0.753
3hj9 FMNUncharacterized protein / 0.752
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.737
3eof FMNPutative oxidase / 0.734
4ttb FMNIodotyrosine deiodinase 1 / 0.729
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.727
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 0.725
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.719
2bkj FMNNADPH-flavin oxidoreductase / 0.691
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.687
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.682
3oib FDAPutative acyl-CoA dehydrogenase / 0.679
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.678
1udy FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.662
3p4t FAOPutative acyl-CoA dehydrogenase / 0.662
2eba FADPutative glutaryl-CoA dehydrogenase / 0.661
5li5 THR_ALA_ASN_PRO_SEPKLTH0G14146p / 0.659
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.658
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.656
1ijh FADCholesterol oxidase 1.1.3.6 0.654
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.653
2ifa FMNUncharacterized protein / 0.650