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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kme INN Disintegrin and metalloproteinase domain-containing protein 17 3.4.24.86

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kme INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 1.063
3l0t INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.901
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.841
1rm8 BATMatrix metalloproteinase-16 3.4.24 0.790
1mnc PLHNeutrophil collagenase 3.4.24.34 0.770
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 0.770
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.769
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 0.769
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.755
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.734
2jih 097A disintegrin and metalloproteinase with thrombospondin motifs 1 3.4.24 0.729
4dd8 BATDisintegrin and metalloproteinase domain-containing protein 8 3.4.24 0.718
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 0.710
4pkw GM6Lethal factor 3.4.24.83 0.698
1biw S80Stromelysin-1 3.4.24.17 0.693
4je7 BB2Peptide deformylase 1A, chloroplastic/mitochondrial 3.5.1.88 0.689
2okl BB2Peptide deformylase 2 / 0.679
1lqy BB2Peptide deformylase 2 3.5.1.88 0.672
2wo9 023Macrophage metalloelastase 3.4.24.65 0.672
2wo8 023Macrophage metalloelastase 3.4.24.65 0.666
2woa 023Macrophage metalloelastase 3.4.24.65 0.658
3kds NHXATP-dependent zinc metalloprotease FtsH / 0.656
4z61 ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 1 2.7.11.1 0.652