sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3kko | GNP | Ras-related protein M-Ras |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 3kko | GNP | Ras-related protein M-Ras | / | 1.258 | |
| 3lbh | GNP | GTPase HRas | / | 1.215 | |
| 3pit | GNP | Ras-related protein M-Ras | / | 1.198 | |
| 4dlx | GNP | GTPase HRas | / | 1.198 | |
| 4dlz | GNP | GTPase HRas | / | 1.198 | |
| 4g0n | GNP | GTPase HRas | / | 1.186 | |
| 2rgc | GNP | GTPase HRas | / | 1.183 | |
| 2rge | GNP | GTPase HRas | / | 1.183 | |
| 3i3s | GNP | GTPase HRas | / | 1.182 | |
| 3k8y | GNP | GTPase HRas | / | 1.182 | |
| 3ddc | GNP | GTPase HRas | / | 1.169 | |
| 4dlt | GNP | GTPase HRas | / | 1.167 | |
| 4dlv | GNP | GTPase HRas | / | 1.167 | |
| 3rs5 | GNP | GTPase HRas | / | 1.166 | |
| 3lbi | GNP | GTPase HRas | / | 1.165 | |
| 3rs0 | GNP | GTPase HRas | / | 1.162 | |
| 3lbn | GNP | GTPase HRas | / | 1.161 | |
| 3rsl | GNP | GTPase HRas | / | 1.161 | |
| 4l9w | GNP | GTPase HRas | / | 1.161 | |
| 3rs7 | GNP | GTPase HRas | / | 1.151 | |
| 4dsn | GCP | GTPase KRas | / | 1.149 | |
| 3x1z | GNP | Ras-related protein Rap-1b | / | 1.148 | |
| 4hdo | GNP | Ras-related protein Rap-1b | / | 1.148 | |
| 3l8y | GNP | GTPase HRas | / | 1.147 | |
| 3oiw | GNP | GTPase HRas | / | 1.147 | |
| 3oiv | GNP | GTPase HRas | / | 1.146 | |
| 4nyj | GNP | GTPase HRas | / | 1.145 | |
| 4lhw | GNP | Ras-related protein Rab-8A | / | 1.143 | |
| 3rs4 | GNP | GTPase HRas | / | 1.136 | |
| 3v4f | GNP | GTPase HRas | / | 1.132 | |
| 4dls | GNP | GTPase HRas | / | 1.131 | |
| 4dlw | GNP | GTPase HRas | / | 1.131 | |
| 5b2z | GNP | GTPase HRas | / | 1.131 | |
| 2c5l | GTP | GTPase HRas | / | 1.128 | |
| 4dso | GSP | GTPase KRas | / | 1.121 | |
| 3mjh | GTP | Ras-related protein Rab-5A | / | 1.119 | |
| 2rgb | GNP | GTPase HRas | / | 1.115 | |
| 4nyi | GNP | GTPase HRas | / | 1.114 | |
| 1n6l | GTP | Ras-related protein Rab-5A | / | 1.104 | |
| 4k81 | GTP | GTPase HRas | / | 1.099 | |
| 3rab | GNP | Ras-related protein Rab-3A | / | 1.098 | |
| 3k9l | GNP | GTPase HRas | / | 1.096 | |
| 1zc3 | GNP | Ras-related protein Ral-A | / | 1.093 | |
| 1zc4 | GNP | Ras-related protein Ral-A | / | 1.093 | |
| 1vg8 | GNP | Ras-related protein Rab-7a | / | 1.090 | |
| 4rkf | GNP | Ras-related protein Rab-3 | / | 1.085 | |
| 1yzq | GNP | Ras-related protein Rab-6A | / | 1.083 | |
| 3a58 | GNP | GTP-binding protein RHO1 | / | 1.071 | |
| 1g17 | GNP | Ras-related protein SEC4 | / | 1.068 | |
| 3e5h | GNP | Ras-related protein Rab-28 | / | 1.068 | |
| 5dif | GNP | GTP-binding nuclear protein Ran | / | 1.068 | |
| 4kvg | GTP | Ras-related protein Rap-1A | / | 1.056 | |
| 2xtz | GSP | Guanine nucleotide-binding protein alpha-1 subunit | / | 1.055 | |
| 3oes | GNP | GTPase RhebL1 | / | 1.053 | |
| 3sbe | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.050 | |
| 4xvq | GNP | GTPase HRas | / | 1.044 | |
| 3tso | GNP | Ras-related protein Rab-25 | / | 1.041 | |
| 2gil | GTP | Ras-related protein Rab-6A | / | 1.040 | |
| 3sbd | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 1.038 | |
| 3tnf | GNP | Ras-related protein Rab-8A | / | 1.033 | |
| 2rgg | GNP | GTPase HRas | / | 1.032 | |
| 4hdq | GNP | Ras-related protein Rap-1b | / | 1.029 | |
| 2bme | GNP | Ras-related protein Rab-4A | / | 1.026 | |
| 3oiu | GNP | GTPase HRas | / | 1.021 | |
| 4cym | GCP | Ras-related protein Rab-32 | / | 1.021 | |
| 4o25 | GTP | GTP-binding protein Rheb | / | 1.015 | |
| 3tgp | GNP | GTPase HRas | / | 1.012 | |
| 1tu3 | GNP | Ras-related protein Rab-5A | / | 1.004 | |
| 1kmq | GNP | Transforming protein RhoA | / | 1.001 | |
| 3kud | GDP | GTPase HRas | / | 1.000 | |
| 1t91 | GTP | Ras-related protein Rab-7a | / | 0.997 | |
| 2qme | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.997 | |
| 1yu9 | GNP | Ras-related protein Rab-4A | / | 0.994 | |
| 1gwn | GTP | Rho-related GTP-binding protein RhoE | / | 0.993 | |
| 4qxa | GTP | Ras-related protein Rab-9A | / | 0.985 | |
| 1uad | GNP | Ras-related protein Ral-A | / | 0.984 | |
| 2ffq | GSP | Ras-related protein Rab-6B | / | 0.984 | |
| 1cxz | GSP | Transforming protein RhoA | / | 0.983 | |
| 1mh1 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.982 | |
| 4wa7 | GDP | GTPase KRas | / | 0.979 | |
| 3cx8 | GSP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.978 | |
| 3bc1 | GNP | Ras-related protein Rab-27A | / | 0.976 | |
| 1xtr | GNP | GTP-binding protein Rheb | / | 0.974 | |
| 4js0 | GNP | Cell division control protein 42 homolog | / | 0.973 | |
| 2ce2 | GDP | GTPase HRas | / | 0.970 | |
| 1z0d | GDP | Ras-related protein Rab-5C | / | 0.969 | |
| 3th5 | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.969 | |
| 4o2l | GTP | GTP-binding protein Rheb | / | 0.968 | |
| 1m7b | GTP | Rho-related GTP-binding protein RhoE | / | 0.967 | |
| 3qbt | GNP | Ras-related protein Rab-8A | / | 0.966 | |
| 1ky2 | GNP | GTP-binding protein YPT7 | / | 0.964 | |
| 3w3z | GTP | GTP-binding nuclear protein Ran | / | 0.963 | |
| 4ql3 | GDP | GTPase KRas | / | 0.963 | |
| 1e96 | GTP | Ras-related C3 botulinum toxin substrate 1 | / | 0.962 | |
| 4mit | GTP | Rho-related protein racC | / | 0.961 | |
| 1gia | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.958 | |
| 4epx | GDP | GTPase KRas | / | 0.958 | |
| 2gcp | GSP | Rho-related GTP-binding protein RhoC | / | 0.954 | |
| 4dsu | GDP | GTPase KRas | / | 0.954 | |
| 4goj | GNP | ADP-ribosylation factor-like protein 3 | / | 0.953 | |
| 2cl6 | CAG | GTPase HRas | / | 0.951 | |
| 4l9s | GDP | GTPase HRas | / | 0.949 | |
| 2fg5 | GNP | Ras-related protein Rab-31 | / | 0.947 | |
| 2fe4 | GDP | Ras-related protein Rab-6B | / | 0.946 | |
| 4pao | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.946 | |
| 1oix | GDP | Ras-related protein Rab-11A | / | 0.944 | |
| 1d5c | GDP | GTPase (Rab6) | / | 0.942 | |
| 1ibr | GNP | GTP-binding nuclear protein Ran | / | 0.940 | |
| 1lfd | GNP | GTPase HRas | / | 0.939 | |
| 3b1x | GNP | Ferrous iron transport protein B | / | 0.939 | |
| 3law | GNP | Ras-related protein Rab-7a | / | 0.938 | |
| 3kuc | GDP | Ras-related protein Rap-1A | / | 0.937 | |
| 1a2b | GSP | Transforming protein RhoA | / | 0.936 | |
| 4dxa | GSP | Ras-related protein Rap-1b | / | 0.936 | |
| 4dvg | GSP | Rho family GTPase | / | 0.935 | |
| 1s1c | GNP | Transforming protein RhoA | / | 0.931 | |
| 1wa5 | GTP | GTP-binding nuclear protein Ran | / | 0.931 | |
| 4uj3 | GNP | Ras-related protein Rab-11A | / | 0.931 | |
| 4lv6 | GDP | GTPase KRas | / | 0.930 | |
| 4q02 | GDP | GTPase KRas | / | 0.926 | |
| 4xsg | GSP | Transforming protein RhoA | / | 0.923 | |
| 4l8g | GDP | GTPase KRas | / | 0.920 | |
| 3kkq | GDP | Ras-related protein M-Ras | / | 0.916 | |
| 4tq9 | GDP | GTPase KRas | / | 0.916 | |
| 3x1w | GDP | Ras-related protein Rap-1b | / | 0.914 | |
| 4epw | GDP | GTPase KRas | / | 0.913 | |
| 5c46 | GSP | Ras-related protein Rab-11A | / | 0.913 | |
| 4lhv | GDP | Ras-related protein Rab-8A | / | 0.912 | |
| 4o2r | GDP | GTP-binding protein Rheb | / | 0.911 | |
| 4xvr | GNP | GTPase HRas | / | 0.909 | |
| 5dha | GNP | GTP-binding nuclear protein Ran | / | 0.906 | |
| 2j5x | GSP | ADP-ribosylation factor 6 | / | 0.905 | |
| 4gzl | GNP | Ras-related C3 botulinum toxin substrate 1 | / | 0.905 | |
| 1z2c | GNP | Rho-related GTP-binding protein RhoC | / | 0.904 | |
| 1cul | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.902 | |
| 4q03 | GDP | GTPase KRas | / | 0.901 | |
| 2ov2 | GCP | Ras-related C3 botulinum toxin substrate 3 | / | 0.900 | |
| 1zbd | GTP | Ras-related protein Rab-3A | / | 0.898 | |
| 2qtv | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.898 | |
| 3r9x | GNP | GTPase Era | / | 0.898 | |
| 1ow3 | GDP | Transforming protein RhoA | / | 0.894 | |
| 3tkl | GTP | Ras-related protein Rab-1A | / | 0.892 | |
| 4ldj | GDP | GTPase KRas | / | 0.892 | |
| 2bku | GTP | GTP-binding nuclear protein Ran | / | 0.889 | |
| 2ic5 | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.889 | |
| 3ea5 | GDP | GTP-binding nuclear protein Ran | / | 0.889 | |
| 2dpx | GDP | GTP-binding protein RAD | / | 0.885 | |
| 2ic5 | GNP | Ras-related C3 botulinum toxin substrate 3 | / | 0.884 | |
| 3ref | GDP | Rho family GTPase | / | 0.880 | |
| 1z0f | GDP | Ras-related protein Rab-14 | / | 0.879 | |
| 4d0l | GSP | Ras-related protein Rab-11A | / | 0.879 | |
| 4obe | GDP | GTPase KRas | / | 0.879 | |
| 1gil | GSP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.878 | |
| 1z0a | GDP | Ras-related protein Rab-2A | / | 0.878 | |
| 2fju | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.877 | |
| 1g16 | GDP | Ras-related protein SEC4 | / | 0.876 | |
| 1wdt | GTP | Elongation factor G (EF-G-2) | / | 0.874 | |
| 2w2x | GSP | Ras-related C3 botulinum toxin substrate 2 | / | 0.874 | |
| 2p2l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.871 | |
| 2cls | GTP | Rho-related GTP-binding protein Rho6 | / | 0.865 | |
| 3wyg | GTP | GTP-binding nuclear protein GSP1/CNR1 | / | 0.864 | |
| 3ftq | GNP | Septin-2 | / | 0.861 | |
| 4uj5 | GNP | Ras-related protein Rab-11A | / | 0.860 | |
| 4lpk | GDP | GTPase KRas | / | 0.859 | |
| 1azt | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.858 | |
| 1x1r | GDP | Ras-related protein M-Ras | / | 0.858 | |
| 3eg5 | GNP | Cell division control protein 42 homolog | / | 0.858 | |
| 2g0n | GDP | Ras-related C3 botulinum toxin substrate 3 | / | 0.856 | |
| 2gvd | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.856 | |
| 4itr | GDP | Cell division control protein 42 homolog | / | 0.855 | |
| 1cs4 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.853 | |
| 2j0v | GDP | Rac-like GTP-binding protein ARAC7 | / | 0.852 | |
| 4xoi | GTP | Transforming protein RhoA | / | 0.850 | |
| 4luc | GDP | GTPase KRas | / | 0.848 | |
| 3cph | GDP | Ras-related protein SEC4 | / | 0.843 | |
| 5l3r | GCP | Cell division protein FtsY homolog, chloroplastic | / | 0.842 | |
| 5jlj | GNP | GTP-binding nuclear protein Ran | / | 0.841 | |
| 2q3f | GNP | Ras-related GTP-binding protein D | / | 0.839 | |
| 2bc9 | GNP | Guanylate-binding protein 1 | / | 0.837 | |
| 1z2a | GDP | Ras-related protein Rab-23 | / | 0.836 | |
| 2j7p | GNP | Signal recognition particle protein | / | 0.833 | |
| 2j7p | GNP | Signal recognition particle receptor FtsY | / | 0.833 | |
| 3dt4 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.832 | |
| 1w5t | ANP | ORC1-type DNA replication protein 2 | / | 0.831 | |
| 3myk | ANP | Myosin-2 heavy chain | / | 0.831 | |
| 4idn | GNP | Atlastin-1 | 3.6.5 | 0.831 | |
| 3cx6 | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.830 | |
| 3dt2 | GTP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.826 | |
| 4lrw | GDP | GTPase KRas | / | 0.824 | |
| 2j0s | ANP | Eukaryotic initiation factor 4A-III | 3.6.4.13 | 0.821 | |
| 3tjz | GNP | ADP-ribosylation factor 1 | / | 0.820 | |
| 1rj9 | GCP | Signal recognition particle receptor FtsY | / | 0.819 | |
| 4c2u | ANP | DNA helicase | / | 0.818 | |
| 1mmg | AGS | Myosin-2 heavy chain | / | 0.817 | |
| 3vhx | GTP | ADP-ribosylation factor 6 | / | 0.817 | |
| 3zfd | ANP | Chromosome-associated kinesin KIF4 | / | 0.817 | |
| 1yra | GDP | GPN-loop GTPase PAB0955 | / | 0.816 | |
| 4ncl | GDP | Eukaryotic translation initiation factor 5B | / | 0.816 | |
| 3wyf | GTP | GTP-binding nuclear protein | / | 0.815 | |
| 4tl7 | ATP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.814 | |
| 1fmw | ATP | Myosin-2 heavy chain | / | 0.810 | |
| 2jj2 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.810 | |
| 2jiz | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.809 | |
| 1bof | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.808 | |
| 1okk | GCP | Signal recognition particle protein | / | 0.808 | |
| 1okk | GCP | Signal recognition particle receptor FtsY | / | 0.808 | |
| 4m0l | GDP | Translation initiation factor 2 subunit gamma | / | 0.808 | |
| 1m2o | GNP | Small COPII coat GTPase SAR1 | 3.6.5 | 0.807 | |
| 2w2v | GTP | Ras-related C3 botulinum toxin substrate 2 | / | 0.807 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.807 | |
| 1k5d | GNP | GTP-binding nuclear protein Ran | / | 0.806 | |
| 3a4l | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.805 | |
| 5hpy | GDP | Transforming protein RhoA | / | 0.805 | |
| 5l3s | GNP | Signal recognition particle receptor FtsY | / | 0.805 | |
| 1got | GDP | Guanine nucleotide-binding protein G(t) subunit alpha-1 | / | 0.803 | |
| 1p3d | ANP | UDP-N-acetylmuramate--L-alanine ligase | 6.3.2.8 | 0.803 | |
| 3onw | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.801 | |
| 3ums | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.798 | |
| 3vx4 | ATP | Putative ABC transporter, ATP-binding protein ComA | / | 0.798 | |
| 4idp | GNP | Atlastin-1 | 3.6.5 | 0.797 | |
| 1h65 | GDP | Translocase of chloroplast 34 | 3.6.5 | 0.796 | |
| 1q3h | ANP | Cystic fibrosis transmembrane conductance regulator | / | 0.796 | |
| 1zcb | GDP | Guanine nucleotide-binding protein subunit alpha-13 | / | 0.796 | |
| 5bn3 | ADP | V-type ATP synthase alpha chain | / | 0.796 | |
| 5bn3 | ADP | NEQ263 | / | 0.796 | |
| 1ayl | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.792 | |
| 4tl6 | ANP | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.790 | |
| 1ytm | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.789 | |
| 3zia | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.787 | |
| 1f5n | GNP | Guanylate-binding protein 1 | / | 0.785 | |
| 4pjk | ADP | Myosin-2 heavy chain | / | 0.785 | |
| 1jx2 | ADP | Myosin-2 heavy chain | / | 0.784 | |
| 1xts | GTP | GTP-binding protein Rheb | / | 0.784 | |
| 2jlr | ANP | Genome polyprotein | 3.4.21.91 | 0.784 | |
| 1w5s | ADP | ORC1-type DNA replication protein 2 | / | 0.783 | |
| 4cf7 | ADP | Adenylate kinase | / | 0.783 | |
| 4jl5 | ADP | Adenylate kinase | / | 0.782 | |
| 4jlo | ADP | Adenylate kinase | / | 0.782 | |
| 4xjx | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.782 | |
| 1e79 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.781 | |
| 1e79 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.781 | |
| 3fwy | ADP | Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein | / | 0.781 | |
| 1khb | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.779 | |
| 4gzm | GSP | Ras-related C3 botulinum toxin substrate 1 | / | 0.778 | |
| 4z54 | GDP | Neuronal-specific septin-3 | / | 0.778 | |
| 1ank | ANP | Adenylate kinase | / | 0.776 | |
| 2xtn | GTP | GTPase IMAP family member 2 | / | 0.776 | |
| 4tlb | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.776 | |
| 3adc | ANP | L-seryl-tRNA(Sec) kinase | 2.7.1.164 | 0.775 | |
| 4jsy | GTP | Metallophosphoesterase | / | 0.775 | |
| 4tlc | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.775 | |
| 5k5z | ANP | Uncharacterized protein | / | 0.775 | |
| 4tld | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.774 | |
| 1e79 | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.772 | |
| 1e79 | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.772 | |
| 3t1t | GDP | Probable gliding protein mglA | / | 0.772 | |
| 2hf8 | GSP | Probable hydrogenase nickel incorporation protein HypB | / | 0.771 | |
| 1a4r | GNH | Cell division control protein 42 homolog | / | 0.770 | |
| 2fna | ADP | Uncharacterized protein | / | 0.770 | |
| 4y0v | GDP | ADP-ribosylation factor 1, putative | / | 0.770 | |
| 4ylg | GDP | ADP-ribosylation factor 1, putative | / | 0.770 | |
| 1gp2 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.769 | |
| 2jj2 | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.769 | |
| 4pjj | ADP | Unconventional myosin-VI | / | 0.769 | |
| 1w0k | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.768 | |
| 1w0k | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.768 | |
| 3bb3 | GDP | Translocase of chloroplast 33, chloroplastic | 3.6.5 | 0.768 | |
| 4ki0 | ANP | Maltose/maltodextrin import ATP-binding protein MalK | / | 0.768 | |
| 1mma | ADP | Myosin-2 heavy chain | / | 0.767 | |
| 1u0h | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.767 | |
| 2ck3 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.767 | |
| 2ck3 | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.767 | |
| 2zet | GTP | Ras-related protein Rab-27B | / | 0.767 | |
| 4jl6 | ADP | Adenylate kinase | / | 0.767 | |
| 4pfp | ADP | Unconventional myosin-VI | / | 0.767 | |
| 1zd9 | GDP | ADP-ribosylation factor-like protein 8A | / | 0.766 | |
| 3sqw | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.766 | |
| 3sqx | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.766 | |
| 2db3 | ANP | ATP-dependent RNA helicase vasa, isoform A | 3.6.4.13 | 0.765 | |
| 4yqf | GDP | Septin-9 | / | 0.764 | |
| 2uyi | ADP | Kinesin-like protein KIF11 | / | 0.762 | |
| 3tqc | ADP | Pantothenate kinase | / | 0.762 | |
| 4c0b | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.761 | |
| 4cei | ANP | ATP-dependent helicase/deoxyribonuclease subunit B | 3.1 | 0.761 | |
| 4pk4 | ADP | Unconventional myosin-VI | / | 0.761 | |
| 2x7e | ADP | Kinesin-like protein KIF11 | / | 0.759 | |
| 3c16 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.759 | |
| 4ol0 | GTP | GTP-binding nuclear protein Ran | / | 0.759 | |
| 4tl8 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.759 | |
| 4r9u | ANP | Vitamin B12 import ATP-binding protein BtuD | / | 0.758 | |
| 5aun | ADP | Iron-sulfur cluster carrier protein | / | 0.758 | |
| 1fnn | ADP | ORC1-type DNA replication protein | / | 0.756 | |
| 4cid | ANP | EH domain-containing protein 2 | / | 0.752 | |
| 5d3q | GDP | Dynamin-1 | 3.6.5.5 | 0.752 | |
| 1khe | GCP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.751 | |
| 1l8q | ADP | Chromosomal replication initiator protein DnaA | / | 0.751 | |
| 4jky | ADP | Adenylate kinase | / | 0.751 | |
| 4jld | ADP | Adenylate kinase | / | 0.751 | |
| 1p9w | ANP | Type II secretion system protein E | / | 0.750 | |
| 4db1 | ANP | Myosin-7 | / | 0.750 | |
| 2qen | ADP | Walker-Type ATPase | / | 0.748 | |
| 1e1q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.747 | |
| 1bmf | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.746 | |
| 1bmf | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.746 | |
| 2v1x | ADP | ATP-dependent DNA helicase Q1 | 3.6.4.12 | 0.746 | |
| 2r9v | ATP | ATP synthase subunit alpha | / | 0.745 | |
| 4qm6 | GTP | Metallophosphoesterase | / | 0.745 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.744 | |
| 3tlx | ADP | Adenylate kinase 2 | / | 0.744 | |
| 5cyo | GDP | Septin-9 | / | 0.744 | |
| 2fah | GDP | Phosphoenolpyruvate carboxykinase [GTP], mitochondrial | 4.1.1.32 | 0.743 | |
| 4bec | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.743 | |
| 4asu | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.742 | |
| 4g5q | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.742 | |
| 2gm1 | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 2msc | GDP | MHC class I alpha chain | / | 0.741 | |
| 2xae | ADP | Kinesin-like protein KIF11 | / | 0.741 | |
| 5i67 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.741 | |
| 2olr | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.740 | |
| 1bmf | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.739 | |
| 1bmf | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.739 | |
| 1xms | ANP | Protein RecA | / | 0.739 | |
| 2zts | ADP | Uncharacterized protein | / | 0.739 | |
| 3a6p | GTP | GTP-binding nuclear protein Ran | / | 0.739 | |
| 3qe0 | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.738 | |
| 1sdm | ADP | Kinesin heavy chain-like protein | / | 0.737 | |
| 1xmv | ADP | Protein RecA | / | 0.737 | |
| 1wbb | ADP | DNA mismatch repair protein MutS | / | 0.736 | |
| 3i5x | ANP | ATP-dependent RNA helicase MSS116, mitochondrial | 3.6.4.13 | 0.736 | |
| 4r43 | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.736 | |
| 4jjz | ADP | Formate--tetrahydrofolate ligase | / | 0.735 | |
| 2v7q | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.733 | |
| 2v7q | ATP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.733 | |
| 4v02 | ATP | Site-determining protein | / | 0.733 | |
| 1sq5 | ADP | Pantothenate kinase | 2.7.1.33 | 0.732 | |
| 2dwp | ACP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 | 2.7.1.105 | 0.732 | |
| 1svw | GTP | Probable GTP-binding protein EngB | / | 0.731 | |
| 4nh0 | ATP | ESX secretion system protein EccC | / | 0.731 | |
| 1b7t | ADP | Myosin heavy chain, striated muscle | / | 0.730 | |
| 2c9o | ADP | RuvB-like 1 | 3.6.4.12 | 0.730 | |
| 1rrg | GDP | ADP-ribosylation factor 1 | / | 0.729 | |
| 4ohv | ANP | Protein clpf-1 | / | 0.729 | |
| 2eck | ADP | Adenylate kinase | / | 0.726 | |
| 2jiz | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 2v7q | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.725 | |
| 4ap0 | ADP | Kinesin-like protein KIF11 | / | 0.723 | |
| 1yrs | ADP | Kinesin-like protein KIF11 | / | 0.722 | |
| 3moh | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.722 | |
| 4wou | GDP | Phosphoenolpyruvate carboxykinase [GTP] | / | 0.722 | |
| 2vor | ACP | Folylpolyglutamate synthase | / | 0.721 | |
| 3q5d | GDP | Atlastin-1 | 3.6.5 | 0.721 | |
| 4tle | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.721 | |
| 1fp6 | ADP | Nitrogenase iron protein 1 | 1.18.6.1 | 0.720 | |
| 1z6t | ADP | Apoptotic protease-activating factor 1 | / | 0.720 | |
| 3oee | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.720 | |
| 3oee | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.720 | |
| 3pcr | GTP | ADP-ribosylation factor 6 | / | 0.720 | |
| 5di3 | GNP | ADP-ribosylation factor-like protein 3 | / | 0.720 | |
| 1ake | AP5 | Adenylate kinase | / | 0.718 | |
| 1w1w | AGS | Structural maintenance of chromosomes protein 1 | / | 0.718 | |
| 2g1q | ADP | Kinesin-like protein KIF11 | / | 0.718 | |
| 2l0x | GDP | GTP-binding protein Rheb | / | 0.718 | |
| 3cob | ADP | Kinesin heavy chain-like protein | / | 0.718 | |
| 4bzq | ADP | Bifunctional enzyme CysN/CysC | 2.7.1.25 | 0.718 | |
| 2bif | ANP | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.717 | |
| 3fkq | ATP | NtrC-like two-domain protein | / | 0.717 | |
| 3ieu | GDP | GTPase Era | / | 0.717 | |
| 3nbz | GTP | GTP-binding nuclear protein Ran | / | 0.717 | |
| 4ike | ADP | Adenylate kinase | / | 0.716 | |
| 1xef | ATP | Alpha-hemolysin translocation ATP-binding protein HlyB | / | 0.715 | |
| 2hld | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.715 | |
| 2hld | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.715 | |
| 4cvl | ACP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.715 | |
| 4dzz | ADP | Plasmid partitioning protein ParF | / | 0.715 | |
| 1w5t | ADP | ORC1-type DNA replication protein 2 | / | 0.714 | |
| 3oeh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.713 | |
| 1ii6 | ADP | Kinesin-like protein KIF11 | / | 0.712 | |
| 4ymu | ATP | ABC-type polar amino acid transport system, ATPase component | / | 0.712 | |
| 5ftc | ADP | TPR domain protein | / | 0.710 | |
| 1xnj | ADP | Bifunctional 3'-phosphoadenosine 5'-phosphosulfate synthase 1 | 2.7.1.25 | 0.709 | |
| 2xau | ADP | Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43 | 3.6.4.13 | 0.709 | |
| 1nly | AGS | Cag alpha | / | 0.708 | |
| 2pg2 | ADP | Kinesin-like protein KIF11 | / | 0.708 | |
| 4iok | ADP | Formate--tetrahydrofolate ligase | / | 0.708 | |
| 1h8h | ADP | ATP synthase subunit alpha, mitochondrial | / | 0.707 | |
| 1h8h | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.707 | |
| 2gks | ADP | Probable bifunctional SAT/APS kinase | 2.7.1.25 | 0.707 | |
| 4a28 | ADP | Kinesin-like protein KIF11 | / | 0.707 | |
| 1v8k | ANP | Kinesin-like protein KIF2C | / | 0.706 | |
| 3c15 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.706 | |
| 4tl9 | AGS | Circadian clock protein kinase KaiC | 2.7.11.1 | 0.706 | |
| 2qf2 | GDP | Phosphoenolpyruvate carboxykinase, cytosolic [GTP] | 4.1.1.32 | 0.705 | |
| 4ohx | ADP | Protein clpf-1 | / | 0.705 | |
| 4oi4 | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.703 | |
| 4qos | ADP | Psp operon transcriptional activator | / | 0.703 | |
| 1aq2 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.702 | |
| 4c30 | ANP | DNA helicase | / | 0.701 | |
| 4iei | ADP | Gene 2 protein | / | 0.701 | |
| 3kji | ADP | CO dehydrogenase/acetyl-CoA synthase complex, accessory protein CooC | / | 0.700 | |
| 1am4 | GNP | Cell division control protein 42 homolog | / | 0.699 | |
| 4g01 | GDP | Ras-related protein RABF2b | / | 0.699 | |
| 4hse | ADP | Chaperone protein ClpB | / | 0.698 | |
| 2fl2 | ADP | Kinesin-like protein KIF11 | / | 0.697 | |
| 3c14 | GSP | Guanine nucleotide-binding protein G(s) subunit alpha isoforms short | / | 0.697 | |
| 1i4l | GDP | Ras-related C3 botulinum toxin substrate 1 | / | 0.696 | |
| 3hqd | ANP | Kinesin-like protein KIF11 | / | 0.695 | |
| 4oi2 | ADP | Protein clpf-1 | / | 0.693 | |
| 3qcz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.692 | |
| 2ad5 | ADP | CTP synthase | / | 0.691 | |
| 2jj1 | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.691 | |
| 3bos | CDP | Regulatory inactivation of DnaA Hda protein | / | 0.690 | |
| 1w7k | ADP | Dihydrofolate synthase/folylpolyglutamate synthase | 6.3.2.12 | 0.689 | |
| 4a1z | ADP | Kinesin-like protein KIF11 | / | 0.689 | |
| 2vf7 | ADP | UvrABC system protein A | / | 0.688 | |
| 3q9l | ATP | Septum site-determining protein MinD | / | 0.688 | |
| 4x8o | AP5 | Adenylate kinase | / | 0.688 | |
| 1os1 | ATP | Phosphoenolpyruvate carboxykinase (ATP) | / | 0.687 | |
| 1j7k | ATP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.686 | |
| 1ohh | ANP | ATP synthase subunit alpha, mitochondrial | / | 0.686 | |
| 1ohh | ANP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.686 | |
| 4bub | ADP | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--LD-lysine ligase | / | 0.686 | |
| 1esn | ANP | Pantothenate kinase | 2.7.1.33 | 0.684 | |
| 2bbw | GP5 | Adenylate kinase 4, mitochondrial | / | 0.682 | |
| 3zia | ADP | ATP synthase subunit beta, mitochondrial | 3.6.3.14 | 0.682 | |
| 4be7 | ATP | Type I restriction enzyme EcoR124II R protein | 3.1.21.3 | 0.682 | |
| 4ko8 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.681 | |
| 1in5 | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.680 | |
| 3ews | ADP | ATP-dependent RNA helicase DDX19B | 3.6.4.13 | 0.680 | |
| 4cdg | ADP | Bloom syndrome protein | 3.6.4.12 | 0.680 | |
| 5irn | ADP | Nucleotide binding oligomerization domain containing 2 | / | 0.680 | |
| 1bif | AGS | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4 | 2.7.1.105 | 0.679 | |
| 1ny5 | ADP | Transcriptional regulator (NtrC family) | / | 0.679 | |
| 2iut | AGS | DNA translocase FtsK | / | 0.679 | |
| 2npi | ATP | mRNA cleavage and polyadenylation factor CLP1 | / | 0.679 | |
| 3jvv | ACP | Twitching mobility protein | / | 0.679 | |
| 3r9i | ADP | Septum site-determining protein MinD | / | 0.679 | |
| 2c9c | ATP | Psp operon transcriptional activator | / | 0.678 | |
| 3tif | ADP | Uncharacterized ABC transporter ATP-binding protein MJ0796 | / | 0.678 | |
| 4d81 | ADP | AAA ATPase, central domain protein | / | 0.675 | |
| 4gp6 | ADP | Metallophosphoesterase | / | 0.675 | |
| 1sxj | AGS | Replication factor C subunit 1 | / | 0.674 | |
| 2ql6 | ADP | Nicotinamide riboside kinase 1 | / | 0.674 | |
| 4e03 | ADP | Plasmid partitioning protein ParF | / | 0.674 | |
| 2zrj | AGS | Protein RecA | / | 0.673 | |
| 3bbp | GTP | Ras-related protein Rab-6A | / | 0.673 | |
| 3pyz | ANP | Dihydrofolate synthase/folylpolyglutamate synthase | / | 0.673 | |
| 2x2r | ADP | Kinesin-like protein KIF11 | / | 0.672 | |
| 4hut | ATP | Cob(I)yrinic acid a,c-diamide adenosyltransferase | 2.5.1.17 | 0.672 | |
| 4i1v | ADP | Dephospho-CoA kinase | / | 0.672 | |
| 3hu3 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.671 | |
| 3zl8 | ADP | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase | / | 0.671 | |
| 4kln | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.670 | |
| 1g6o | ADP | Cag alpha | / | 0.669 | |
| 2zr9 | DTP | Protein RecA | / | 0.669 | |
| 4hi0 | GDP | Urease accessory protein UreG | / | 0.669 | |
| 1svm | ATP | Large T antigen | 3.6.4 | 0.668 | |
| 3l9h | ADP | Kinesin-like protein KIF11 | / | 0.668 | |
| 1um8 | ADP | ATP-dependent Clp protease ATP-binding subunit ClpX | / | 0.666 | |
| 1s3s | ADP | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.665 | |
| 2xto | GDP | GTPase IMAP family member 2 | / | 0.664 | |
| 3thy | ADP | DNA mismatch repair protein Msh2 | / | 0.664 | |
| 1nsf | ATP | Vesicle-fusing ATPase | 3.6.4.6 | 0.663 | |
| 3pfi | ADP | Holliday junction ATP-dependent DNA helicase RuvB | / | 0.663 | |
| 3zvm | ADP | Bifunctional polynucleotide phosphatase/kinase | 2.7.1.78 | 0.663 | |
| 2zpa | ADP | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.662 | |
| 4a51 | ADP | Kinesin-like protein KIF11 | / | 0.662 | |
| 3k3b | ADP | Kinesin-like protein KIF11 | / | 0.660 | |
| 1mab | ATP | ATP synthase subunit alpha, mitochondrial | / | 0.657 | |
| 3kz1 | GSP | Transforming protein RhoA | / | 0.657 | |
| 4h1v | GNP | Dynamin-1-like protein | 3.6.5.5 | 0.657 | |
| 5ftf | ADP | TPR domain protein | / | 0.657 | |
| 1w7i | ADP | Unconventional myosin-Va | / | 0.656 | |
| 2dft | ADP | Shikimate kinase | 2.7.1.71 | 0.656 | |
| 3l1c | ADP | Protein claret segregational | / | 0.656 | |
| 4yer | ADP | Antibiotic ABC transporter, ATP-binding protein, putative | / | 0.656 | |
| 3hu1 | AGS | Transitional endoplasmic reticulum ATPase | 3.6.4.6 | 0.655 | |
| 1ofh | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.652 | |
| 1kqm | ANP | Myosin heavy chain, striated muscle | / | 0.651 | |
| 1y3a | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.651 | |
| 1ht2 | ADP | ATP-dependent protease ATPase subunit HslU | / | 0.650 | |
| 1s4p | GDP | Glycolipid 2-alpha-mannosyltransferase | / | 0.650 | |
| 3k1j | ADP | ATP-dependent protease Lon | / | 0.650 | |
| 5dac | AGS | Uncharacterized protein | / | 0.650 |