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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kh5 ADP Uncharacterized protein MJ1225

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kh5 ADPUncharacterized protein MJ1225 / 0.997
3lfz ATPUncharacterized protein MJ1225 / 0.875
3kpb SAMUncharacterized protein MJ0100 / 0.746
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.726
1kph SAHCyclopropane mycolic acid synthase 1 2.1.1.79 0.694
2y8l ADP5'-AMP-activated protein kinase subunit gamma-1 / 0.687
3lfz ADPUncharacterized protein MJ1225 / 0.684
4dqw ATPInosine-5'-monophosphate dehydrogenase / 0.669
1r6t TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.668
4kvz SAHPtnL protein / 0.660
1u4s BIHL-lactate dehydrogenase 1.1.1.27 0.656
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.655