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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3keu ATP Pyridoxal kinase 2.7.1.35

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3keu ATPPyridoxal kinase 2.7.1.35 1.026
4en4 ATPPyridoxal kinase 2.7.1.35 0.902
2yxu ATPPyridoxal kinase 2.7.1.35 0.877
3fhy ATPPyridoxal kinase 2.7.1.35 0.780
3ibq ATPPyridoxal kinase / 0.732
4s1h ADPPyridoxal kinase, putative / 0.692
4o30 SAHProbable Histone-lysine N-methyltransferase ATXR5 2.1.1.43 0.668
3hyo ADPPyridoxal kinase / 0.665
2b0q ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.664
1rfu ADPPyridoxal kinase 2.7.1.35 0.655
1l8t ADPAminoglycoside 3'-phosphotransferase 2.7.1.95 0.652