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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kdu NKS Peroxisome proliferator-activated receptor alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kdu NKSPeroxisome proliferator-activated receptor alpha / 1.534
3kdt 7HAPeroxisome proliferator-activated receptor alpha / 0.925
2rew REWPeroxisome proliferator-activated receptor alpha / 0.876
2p54 735Peroxisome proliferator-activated receptor alpha / 0.824
2npa MMBPeroxisome proliferator-activated receptor alpha / 0.813
1k7l 544Peroxisome proliferator-activated receptor alpha / 0.812
1kkq 471Peroxisome proliferator-activated receptor alpha / 0.766
1k74 544Peroxisome proliferator-activated receptor gamma / 0.726
1met DMPGag-Pol polyprotein 3.4.23.16 0.662
3fql 79ZGenome polyprotein 2.7.7.48 0.662
2oyu IMSProstaglandin G/H synthase 1 1.14.99.1 0.656