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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kds NHX ATP-dependent zinc metalloprotease FtsH

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kds NHXATP-dependent zinc metalloprotease FtsH / 0.969
4pkw GM6Lethal factor 3.4.24.83 0.728
1rm8 BATMatrix metalloproteinase-16 3.4.24 0.727
2w14 WR2Snake venom metalloproteinase BaP1 3.4.24 0.720
2w13 WR2Snake venom metalloproteinase BaP1 3.4.24 0.706
2i47 INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.699
2dw0 GM6Zinc metalloproteinase-disintegrin-like VAP2B 3.4.24 0.696
4dd8 BATDisintegrin and metalloproteinase domain-containing protein 8 3.4.24 0.688
1mnc PLHNeutrophil collagenase 3.4.24.34 0.682
1jk3 BATMacrophage metalloelastase 3.4.24.65 0.680
2jih 097A disintegrin and metalloproteinase with thrombospondin motifs 1 3.4.24 0.667
4q4e BB2Aminopeptidase N 3.4.11.2 0.663
2i47 KGYDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.661
2j83 BATUlilysin 3.4.24 0.660
3kme INNDisintegrin and metalloproteinase domain-containing protein 17 3.4.24.86 0.656
1g49 111Stromelysin-1 3.4.24.17 0.655
3zxh E41Collagenase 3 3.4.24 0.655
1gkc NFHMatrix metalloproteinase-9 3.4.24.35 0.653
3hy7 097A disintegrin and metalloproteinase with thrombospondin motifs 5 3.4.24 0.652
2w0d CGSMacrophage metalloelastase 3.4.24.65 0.651