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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kc1 2T6 Fructose-1,6-bisphosphatase 1 3.1.3.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kc1 2T6Fructose-1,6-bisphosphatase 1 3.1.3.11 0.947
3kbz 2T4Fructose-1,6-bisphosphatase 1 3.1.3.11 0.825
3a29 2T0Fructose-1,6-bisphosphatase 1 3.1.3.11 0.763
3kc0 2T5Fructose-1,6-bisphosphatase 1 3.1.3.11 0.689
1bmf ADPATP synthase subunit alpha, mitochondrial / 0.673
1bmf ADPATP synthase subunit beta, mitochondrial 3.6.3.14 0.673
4hbm 0Y7E3 ubiquitin-protein ligase Mdm2 6.3.2 0.664
4ere 0R2E3 ubiquitin-protein ligase Mdm2 6.3.2 0.663
3q5d GDPAtlastin-1 3.6.5 0.660
2dwp ACP6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 2.7.1.105 0.658
2zr9 DTPProtein RecA / 0.658
1fnd A2PFerredoxin--NADP reductase, chloroplastic 1.18.1.2 0.657
3thy ADPDNA mismatch repair protein Msh2 / 0.656
2dft ADPShikimate kinase 2.7.1.71 0.655
4ww4 ADPRuvB-like helicase / 0.655