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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kb0 A8S Abscisic acid receptor PYL2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kb0 A8SAbscisic acid receptor PYL2 / 0.908
4oic A8SBet v I allergen-like / 0.794
4ds8 A8SAbscisic acid receptor PYL3 / 0.757
3k90 A8SAbscisic acid receptor PYR1 / 0.751
4dsc A8SAbscisic acid receptor PYL3 / 0.750
3kdi A8SAbscisic acid receptor PYL2 / 0.738
3kdj A8SAbscisic acid receptor PYL1 / 0.731
3kb3 A8SAbscisic acid receptor PYL2 / 0.727
3oqu A8SAbscisic acid receptor PYL9 / 0.718
4jda A9SAbscisic acid receptor PYL3 / 0.705
3k3k A8SAbscisic acid receptor PYR1 / 0.697
3w9r A8SAbscisic acid receptor PYL9 / 0.693
3ujl A8SAbscisic acid receptor PYL2 / 0.686
3zvu A8SAbscisic acid receptor PYR1 / 0.684
3r6p A8SAbscisic acid receptor PYL10 / 0.682
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.660
1m3q ANGN-glycosylase/DNA lyase 3.2.2 0.660
1v2h GUNPurine nucleoside phosphorylase 2.4.2.1 0.660
2puc GUNHTH-type transcriptional repressor PurR / 0.660
4e5l DBHPolymerase acidic protein / 0.660
4ek9 EP4Histone-lysine N-methyltransferase, H3 lysine-79 specific 2.1.1.43 0.660
1ulb GUNPurine nucleoside phosphorylase 2.4.2.1 0.658
2pot GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
2pwu GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
4h7z GUNQueuine tRNA-ribosyltransferase 2.4.2.29 0.655
2z1x PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
4gcx PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.653
4hvx QEIQueuine tRNA-ribosyltransferase 2.4.2.29 0.651
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.650
3bld PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.650