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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3kaq FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3kaq FMNFlavodoxin / 1.164
3kap FMNFlavodoxin / 0.978
3f6r FMNFlavodoxin / 0.862
1xyy FMNFlavodoxin / 0.813
1j9g FMNFlavodoxin / 0.800
2fx2 FMNFlavodoxin / 0.762
3f90 FMNFlavodoxin / 0.745
1xyv FMNFlavodoxin / 0.723
1c7f FMNFlavodoxin / 0.703
1j8q FMNFlavodoxin / 0.698
1wsb FMNFlavodoxin / 0.697
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.693
5tgz FMNCannabinoid receptor 1 / 0.689
1czn FMNFlavodoxin / 0.688
1ahn FMNFlavodoxin 1 / 0.685
2q9u FMNA-type flavoprotein / 0.678
1akr FMNFlavodoxin / 0.673
1aku FMNFlavodoxin / 0.671
1amo FMNNADPH--cytochrome P450 reductase / 0.668
1akw FMNFlavodoxin / 0.665
3f6s FMNFlavodoxin / 0.661
2v5u FMNFlavodoxin / 0.660
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.657
4oxx FMNCindoxin / 0.655
1azl FMNFlavodoxin / 0.654
3esz FMNFlavodoxin / 0.653
5xr8 FMNCannabinoid receptor 1 / 0.652