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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k9v CPS 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3k9v CPS1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial / 1.035
4qe6 JN3Bile acid receptor / 0.720
3f3y 4OABile salt sulfotransferase 2.8.2.14 0.716
4q0a 4OAVitamin D3 receptor A / 0.685
3w1w CHDFerrochelatase, mitochondrial 4.99.1.1 0.684
1fm4 DXCMajor pollen allergen Bet v 1-L / 0.683
1xu7 CPSCorticosteroid 11-beta-dehydrogenase isozyme 1 1.1.1.146 0.683
2ft9 CHDFatty acid-binding protein 2, liver / 0.680
4f4d CHDFerrochelatase, mitochondrial 4.99.1.1 0.675
2rlc CHDCholoylglycine hydrolase 3.5.1.24 0.669
2pnj CHDFerrochelatase, mitochondrial 4.99.1.1 0.667
1o1v TCHGastrotropin / 0.664
3w5r LOAVitamin D3 receptor / 0.662
2aa5 STRMineralocorticoid receptor / 0.661
4c49 HCYCorticosteroid-binding globulin / 0.660
2aa7 1CAMineralocorticoid receptor / 0.657
2ab2 SNLMineralocorticoid receptor / 0.657
2b03 TUDPhospholipase A2, major isoenzyme 3.1.1.4 0.650