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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k8q 22A Purine nucleoside phosphorylase 2.4.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.831
2a0y DIHPurine nucleoside phosphorylase 2.4.2.1 0.745
2a0x DIHPurine nucleoside phosphorylase 2.4.2.1 0.742
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.733
2a0w DIHPurine nucleoside phosphorylase 2.4.2.1 0.732
1rt9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.724
1rsz DIHPurine nucleoside phosphorylase 2.4.2.1 0.715
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.715
2p4s DIHAGAP005945-PA / 0.699
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.699
3k8o 229Purine nucleoside phosphorylase 2.4.2.1 0.699
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.692
1rr6 IMHPurine nucleoside phosphorylase 2.4.2.1 0.691
2q7o IMHPurine nucleoside phosphorylase 2.4.2.1 0.691
1b8o IMHPurine nucleoside phosphorylase 2.4.2.1 0.688
1pf7 IMHPurine nucleoside phosphorylase 2.4.2.1 0.680
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.677
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.675
2oc4 IMHPurine nucleoside phosphorylase 2.4.2.1 0.669
3iex GMPPurine nucleoside phosphorylase / 0.652