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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k47 D09 Dihydrofolate reductase 1.5.1.3

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3k47 D09Dihydrofolate reductase 1.5.1.3 0.899
3nxt D2EDihydrofolate reductase 1.5.1.3 0.805
3k45 51PDihydrofolate reductase 1.5.1.3 0.739
3nxo D2BDihydrofolate reductase 1.5.1.3 0.669
3oaf OAGDihydrofolate reductase 1.5.1.3 0.665
3gyf 51PDihydrofolate reductase 1.5.1.3 0.658
3l3r OAGDihydrofolate reductase 1.5.1.3 0.655
4kak 06UDihydrofolate reductase 1.5.1.3 0.655
1m79 MQ1Dihydrofolate reductase 1.5.1.3 0.652