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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k0f ATP Circadian clock protein kinase KaiC 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3k0f ATPCircadian clock protein kinase KaiC 2.7.11.1 1.185
3dvl ATPCircadian clock protein kinase KaiC 2.7.11.1 1.078
1tf7 ATPCircadian clock protein kinase KaiC 2.7.11.1 1.057
1u9i ATPCircadian clock protein kinase KaiC 2.7.11.1 1.057
3s1a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.933
2gbl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.912
3jzm ATPCircadian clock protein kinase KaiC 2.7.11.1 0.856
4tla ADPCircadian clock protein kinase KaiC 2.7.11.1 0.762
3k0a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.760
4tlb AGSCircadian clock protein kinase KaiC 2.7.11.1 0.749
4o0m ATPCircadian clock protein kinase KaiC 2.7.11.1 0.746
4tle AGSCircadian clock protein kinase KaiC 2.7.11.1 0.730
4tld AGSCircadian clock protein kinase KaiC 2.7.11.1 0.724
4tl7 ATPCircadian clock protein kinase KaiC 2.7.11.1 0.722
4tl9 AGSCircadian clock protein kinase KaiC 2.7.11.1 0.721
4tl6 ANPCircadian clock protein kinase KaiC 2.7.11.1 0.720
4tlc AGSCircadian clock protein kinase KaiC 2.7.11.1 0.706
4tl8 AGSCircadian clock protein kinase KaiC 2.7.11.1 0.689
4dxj 0M9Farnesyl pyrophosphate synthase / 0.669
5dac AGSUncharacterized protein / 0.664
4mkf AP5Adenylate kinase / 0.660
2jj2 ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.657
1ytm ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.654
5ero 210Fusicoccadiene synthase 2.5.1.29 0.653
1oe0 TTPDeoxynucleoside kinase / 0.651
4w5j AP5Adenylate kinase / 0.651