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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3k0a ATP Circadian clock protein kinase KaiC 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3k0a ATPCircadian clock protein kinase KaiC 2.7.11.1 1.014
3s1a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.773
3k0f ATPCircadian clock protein kinase KaiC 2.7.11.1 0.760
3jzm ATPCircadian clock protein kinase KaiC 2.7.11.1 0.737
3dvl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.710
4rzu ADPProbable thymidylate kinase 2.7.4.9 0.688
1tf7 ATPCircadian clock protein kinase KaiC 2.7.11.1 0.683
1u9i ATPCircadian clock protein kinase KaiC 2.7.11.1 0.683
2gbl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.675
4ocv ANPAminoglycoside phosphotransferase / 0.655