Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jzm ATP Circadian clock protein kinase KaiC 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jzm ATPCircadian clock protein kinase KaiC 2.7.11.1 1.103
1tf7 ATPCircadian clock protein kinase KaiC 2.7.11.1 0.867
1u9i ATPCircadian clock protein kinase KaiC 2.7.11.1 0.867
3k0f ATPCircadian clock protein kinase KaiC 2.7.11.1 0.856
3dvl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.818
3s1a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.801
2gbl ATPCircadian clock protein kinase KaiC 2.7.11.1 0.780
3k0a ATPCircadian clock protein kinase KaiC 2.7.11.1 0.737
4tlc AGSCircadian clock protein kinase KaiC 2.7.11.1 0.681
4tla ADPCircadian clock protein kinase KaiC 2.7.11.1 0.678
4tl8 AGSCircadian clock protein kinase KaiC 2.7.11.1 0.656
4tlb AGSCircadian clock protein kinase KaiC 2.7.11.1 0.652