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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jy0 LYG Serine/threonine-protein kinase pim-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jy0 LYGSerine/threonine-protein kinase pim-1 2.7.11.1 0.976
4e5i 0N9Polymerase acidic protein / 0.744
2obj VRVSerine/threonine-protein kinase pim-1 2.7.11.1 0.714
3r04 UNQSerine/threonine-protein kinase pim-1 2.7.11.1 0.701
4a7c E46Serine/threonine-protein kinase pim-1 2.7.11.1 0.689
4mbl 26LSerine/threonine-protein kinase pim-1 2.7.11.1 0.686
4bzo 676Serine/threonine-protein kinase pim-1 2.7.11.1 0.676
4anm WULCasein kinase II subunit alpha 2.7.11.1 0.675
2xj2 985Serine/threonine-protein kinase pim-1 2.7.11.1 0.674
2c3i IYZSerine/threonine-protein kinase pim-1 2.7.11.1 0.662
4e5f 0N7Polymerase acidic protein / 0.660
2xiz XIZSerine/threonine-protein kinase pim-1 2.7.11.1 0.657
3roc 29AMitogen-activated protein kinase 14 / 0.652