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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jwu H4B Nitric oxide synthase, brain 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jwu H4BNitric oxide synthase, brain 1.14.13.39 0.948
3nlk H4BNitric oxide synthase, brain 1.14.13.39 0.940
3nlv H4BNitric oxide synthase, brain 1.14.13.39 0.932
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.925
4fvx H4BNitric oxide synthase, brain 1.14.13.39 0.925
3b3o H4BNitric oxide synthase, brain 1.14.13.39 0.924
3jwv H4BNitric oxide synthase, brain 1.14.13.39 0.924
3jt8 H4BNitric oxide synthase, brain 1.14.13.39 0.921
3nlo H4BNitric oxide synthase, brain 1.14.13.39 0.921
4fw0 H4BNitric oxide synthase, brain 1.14.13.39 0.921
4imt H4BNitric oxide synthase, brain 1.14.13.39 0.919
3dqr H4BNitric oxide synthase, brain 1.14.13.39 0.917
2hx3 H4BNitric oxide synthase, brain 1.14.13.39 0.908
3nln H4BNitric oxide synthase, brain 1.14.13.39 0.908
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.908
4cx5 H4BNitric oxide synthase, brain 1.14.13.39 0.908
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.907
2hx4 H4BNitric oxide synthase, brain 1.14.13.39 0.906
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.906
3jwt H4BNitric oxide synthase, brain 1.14.13.39 0.906
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.906
4k5f H4BNitric oxide synthase, brain 1.14.13.39 0.906
5agk H4BNitric oxide synthase, brain 1.14.13.39 0.906
5agp H4BNitric oxide synthase, brain 1.14.13.39 0.906
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.905
4fvz H4BNitric oxide synthase, brain 1.14.13.39 0.905
4k5d H4BNitric oxide synthase, brain 1.14.13.39 0.905
3nlp H4BNitric oxide synthase, brain 1.14.13.39 0.904
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.904
4k5e H4BNitric oxide synthase, brain 1.14.13.39 0.904
1zzr H4BNitric oxide synthase, brain 1.14.13.39 0.903
3tym H4BNitric oxide synthase, brain 1.14.13.39 0.903
3svp H4BNitric oxide synthase, brain 1.14.13.39 0.902
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.902
1zzu H4BNitric oxide synthase, brain 1.14.13.39 0.900
3hsn H4BNitric oxide synthase, brain 1.14.13.39 0.900
3jx3 H4BNitric oxide synthase, brain 1.14.13.39 0.900
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.900
3nlr H4BNitric oxide synthase, brain 1.14.13.39 0.899
3jt9 H4BNitric oxide synthase, brain 1.14.13.39 0.896
4jsi H4BNitric oxide synthase, brain 1.14.13.39 0.896
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.893
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.891
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.891
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.890
5agl H4BNitric oxide synthase, brain 1.14.13.39 0.890
3jt6 H4BNitric oxide synthase, brain 1.14.13.39 0.889
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.889
4k5g H4BNitric oxide synthase, brain 1.14.13.39 0.889
1rs7 H4BNitric oxide synthase, brain 1.14.13.39 0.888
3b3p H4BNitric oxide synthase, brain 1.14.13.39 0.888
3n5z H4BNitric oxide synthase, brain 1.14.13.39 0.888
3nly H4BNitric oxide synthase, brain 1.14.13.39 0.888
3ufo H4BNitric oxide synthase, brain 1.14.13.39 0.888
3ufv H4BNitric oxide synthase, brain 1.14.13.39 0.887
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.887
3q99 H4BNitric oxide synthase, brain 1.14.13.39 0.886
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.886
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.886
3jt4 H4BNitric oxide synthase, brain 1.14.13.39 0.885
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.884
3jx2 H4BNitric oxide synthase, brain 1.14.13.39 0.884
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.884
3q9a H4BNitric oxide synthase, brain 1.14.13.39 0.884
3jt7 H4BNitric oxide synthase, brain 1.14.13.39 0.883
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.882
3jx4 H4BNitric oxide synthase, brain 1.14.13.39 0.880
3jta H4BNitric oxide synthase, brain 1.14.13.39 0.879
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.878
4gqe H4BNitric oxide synthase, brain 1.14.13.39 0.874
3nlw H4BNitric oxide synthase, brain 1.14.13.39 0.873
3nlq H4BNitric oxide synthase, brain 1.14.13.39 0.872
1k2t H4BNitric oxide synthase, brain 1.14.13.39 0.870
3jt3 H4BNitric oxide synthase, brain 1.14.13.39 0.869
3rqk H4BNitric oxide synthase, brain 1.14.13.39 0.869
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.869
4jsh H4BNitric oxide synthase, brain 1.14.13.39 0.869
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.868
4fvy H4BNitric oxide synthase, brain 1.14.13.39 0.867
1m00 H4BNitric oxide synthase, brain 1.14.13.39 0.866
3n5y H4BNitric oxide synthase, brain 1.14.13.39 0.866
1p6j H4BNitric oxide synthase, brain 1.14.13.39 0.865
1zvl H4BNitric oxide synthase, brain 1.14.13.39 0.864
3jx5 H4BNitric oxide synthase, brain 1.14.13.39 0.864
3uft H4BNitric oxide synthase, brain 1.14.13.39 0.864
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.863
3n61 H4BNitric oxide synthase, brain 1.14.13.39 0.861
1p6k H4BNitric oxide synthase, brain 1.14.13.39 0.856
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.854
3png H4BNitric oxide synthase, brain 1.14.13.39 0.852
3tyl H4BNitric oxide synthase, brain 1.14.13.39 0.851
3nlj H4BNitric oxide synthase, brain 1.14.13.39 0.847
1rs6 H4BNitric oxide synthase, brain 1.14.13.39 0.835
3ufr H4BNitric oxide synthase, brain 1.14.13.39 0.814
1om5 H4BNitric oxide synthase, brain 1.14.13.39 0.813
3rqj H4BNitric oxide synthase, brain 1.14.13.39 0.807
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.805
3n5v H4BNitric oxide synthase, brain 1.14.13.39 0.805
4jse H4BNitric oxide synthase, brain 1.14.13.39 0.805
4lux H4BNitric oxide synthase, brain 1.14.13.39 0.805
4imu H4BNitric oxide synthase, brain 1.14.13.39 0.792
3svq H4BNitric oxide synthase, brain 1.14.13.39 0.791
3fc5 H4BNitric oxide synthase, brain 1.14.13.39 0.787
3nos H4BNitric oxide synthase, endothelial 1.14.13.39 0.783
1mmv H4BNitric oxide synthase, brain 1.14.13.39 0.767
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.750
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.731
2y37 H4BNitric oxide synthase, inducible 1.14.13.39 0.722
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.719
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.702
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.701
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.698
3dwj H4BNitric oxide synthase, inducible 1.14.13.39 0.692
1r35 H4BNitric oxide synthase, inducible 1.14.13.39 0.686
3e7i H4BNitric oxide synthase, inducible 1.14.13.39 0.668
4gvq N4MMethenyltetrahydromethanopterin cyclohydrolase 3.5.4.27 0.666
4e5f 0N7Polymerase acidic protein / 0.660
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.653
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.652