Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3jsz UPG Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3jsz UPGUncharacterized protein / 1.221
2wzg UPGUncharacterized protein / 1.153
3srz UPGToxin A / 0.741
2vkd UPGCytotoxin L / 0.714
1g9r UPFLgtC / 0.682
2j7c IDEBeta-glucosidase A 3.2.1.21 0.671
3v0o 4GWHisto-blood group ABO system transferase / 0.660