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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ivx FG6 Pantothenate synthetase 6.3.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ivx FG6Pantothenate synthetase 6.3.2.1 1.124
3ivc FG4Pantothenate synthetase 6.3.2.1 0.806
3isj A8DPantothenate synthetase 6.3.2.1 0.718
3img BZ3Pantothenate synthetase 6.3.2.1 0.712
3ivg FG5Pantothenate synthetase 6.3.2.1 0.707
4ddh MS0Pantothenate synthetase 6.3.2.1 0.689