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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iup NDP Possible NADH oxidoreductase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iup NDPPossible NADH oxidoreductase / 1.457
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.760
1qor NDPQuinone oxidoreductase 1 / 0.720
4hwk NAPSepiapterin reductase 1.1.1.153 0.700
1h2b NAJNAD-dependent alcohol dehydrogenase / 0.688
1r37 NADNAD-dependent alcohol dehydrogenase 1.1.1.1 0.688
4kwh NAPReductase homolog / 0.684
3jv7 NADSecondary alcohol dehydrogenase / 0.681
2gn8 NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting) 4.2.1.115 0.678
4b7x NAPProbable oxidoreductase / 0.676
2h63 NAPBiliverdin reductase A 1.3.1.24 0.673
2j8z NAPQuinone oxidoreductase PIG3 1 0.669
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.667
3mje NDPAmphB / 0.667
2q1t NADPutative nucleotide sugar epimerase/ dehydratase / 0.666
4u7w NDPMxaA / 0.666
1oaa NAPSepiapterin reductase 1.1.1.153 0.665
3sxp NADADP-L-glycero-D-mannoheptose-6-epimerase / 0.663
4w6z 8IDAlcohol dehydrogenase 1 1.1.1.1 0.663
1i3l NADUDP-glucose 4-epimerase / 0.662
4rf2 NAPNADPH dependent R-specific alcohol dehydrogenase / 0.662
2ekp NAD2-deoxy-D-gluconate 3-dehydrogenase / 0.661
3rj5 NADAlcohol dehydrogenase 1.1.1.1 0.661
4j7u NAPSepiapterin reductase 1.1.1.153 0.661
1i2b NADUDP-sulfoquinovose synthase, chloroplastic 3.13.1.1 0.660
2oby NAPQuinone oxidoreductase PIG3 1 0.660
2xaa NADSecondary alcohol dehydrogenase / 0.660
2ggs NDPdTDP-4-dehydrorhamnose reductase / 0.659
3mvq NDPGlutamate dehydrogenase 1, mitochondrial 1.4.1.3 0.659
4eue NAITrans-2-enoyl-CoA reductase [NADH] / 0.658
2vwh NAPGlucose 1-dehydrogenase / 0.657
3w8d NAD3-hydroxybutyrate dehydrogenase / 0.656
4dc1 NDPPutative ketoacyl reductase 1.3.1 0.656
3qwb NDPProbable quinone oxidoreductase 1.6.5.5 0.655
1wwk NAD307aa long hypothetical phosphoglycerate dehydrogenase / 0.654
2glx NDP1,5-anhydro-D-fructose reductase / 0.653
2hk9 NAPShikimate dehydrogenase (NADP(+)) / 0.653
2q1u NADPutative nucleotide sugar epimerase/ dehydratase / 0.653
2y05 NAPProstaglandin reductase 1 / 0.651
1geg NADDiacetyl reductase [(S)-acetoin forming] 1.1.1.304 0.650
1u3v NADAlcohol dehydrogenase 1B 1.1.1.1 0.650
2q2v NADBeta-D-hydroxybutyrate dehydrogenase / 0.650
4yai NAIC alpha-dehydrogenase / 0.650