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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ioe A7D Pantothenate synthetase 6.3.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ioe A7DPantothenate synthetase 6.3.2.1 1.033
1n2h PAJPantothenate synthetase 6.3.2.1 0.857
3iod A6DPantothenate synthetase 6.3.2.1 0.815
3iob A4DPantothenate synthetase 6.3.2.1 0.799
3cow 52HPantothenate synthetase 6.3.2.1 0.784
3coy 53HPantothenate synthetase 6.3.2.1 0.769
1n2e APCPantothenate synthetase 6.3.2.1 0.751
3ag6 PAJPantothenate synthetase / 0.747
1n2g APCPantothenate synthetase 6.3.2.1 0.736
1n2i PAJPantothenate synthetase 6.3.2.1 0.733
2x3f APCPantothenate synthetase / 0.723
3coz 54HPantothenate synthetase 6.3.2.1 0.663