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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iob A4D Pantothenate synthetase 6.3.2.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iob A4DPantothenate synthetase 6.3.2.1 0.854
3ioe A7DPantothenate synthetase 6.3.2.1 0.799
1n2g APCPantothenate synthetase 6.3.2.1 0.789
1n2e APCPantothenate synthetase 6.3.2.1 0.788
3coz 54HPantothenate synthetase 6.3.2.1 0.782
3coy 53HPantothenate synthetase 6.3.2.1 0.779
3cow 52HPantothenate synthetase 6.3.2.1 0.775
3iod A6DPantothenate synthetase 6.3.2.1 0.766
1n2i PAJPantothenate synthetase 6.3.2.1 0.760
3ioc A5DPantothenate synthetase 6.3.2.1 0.746
2a84 ATPPantothenate synthetase 6.3.2.1 0.743
1n2h PAJPantothenate synthetase 6.3.2.1 0.740
3ag6 PAJPantothenate synthetase / 0.727
2x3f APCPantothenate synthetase / 0.725
3qtt ANPPantothenate synthetase / 0.718
5hg0 SAMPantothenate synthetase / 0.710
1i6l TYMTryptophan--tRNA ligase 6.1.1.2 0.675
4j75 TYMTryptophan--tRNA ligase / 0.654
3akz GSUGlutamate--tRNA ligase 2 / 0.653
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.653
4i3v NADAldehyde dehydrogenase (NAD+) / 0.653