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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3inr GDU UDP-galactopyranose mutase 5.4.99.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3inr GDUUDP-galactopyranose mutase 5.4.99.9 1.095
3hdy GDUUDP-galactopyranose mutase / 0.696
3gf4 UPGUDP-galactopyranose mutase 5.4.99.9 0.695
3hdq GDUUDP-galactopyranose mutase / 0.671
3gf4 U5PUDP-galactopyranose mutase 5.4.99.9 0.669
4rph GDUUDP-galactopyranose mutase 5.4.99.9 0.659
1g8o U5PN-acetyllactosaminide alpha-1,3-galactosyltransferase / 0.658
4rpg GDUUDP-galactopyranose mutase 5.4.99.9 0.650