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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3in1 ADP Uncharacterized sugar kinase YdjH 2.7.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3in1 ADPUncharacterized sugar kinase YdjH 2.7.1 0.838
5c41 ACPRibokinase / 0.707
5c3y AN2Ribokinase / 0.699
1lik ADNAdenosine kinase 2.7.1.20 0.664
2ab8 ACPAdenosine kinase 2.7.1.20 0.664
3uqd ADPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.663
2dcn ADP2-keto-3-deoxy-gluconate kinase / 0.651
5c40 ACPRibokinase / 0.650