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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iid APR Core histone macro-H2A.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iid APRCore histone macro-H2A.1 / 1.234
3iif APRCore histone macro-H2A.1 / 1.032
5cb3 APRO-acetyl-ADP-ribose deacetylase / 0.755
2fav APRNonstructural polyprotein pp1a / 0.742
2bfq AR6[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.741
3gqo APRNon-structural polyprotein / 0.740
1txz APRProbable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84 0.729
5fsy AR6Uncharacterized protein / 0.700
1ty8 ADPProbable ADP-ribose 1''-phosphate phosphatase YML087W 3.1.3.84 0.695
3q71 AR6Poly [ADP-ribose] polymerase 14 2.4.2.30 0.693
4d86 ADPPoly [ADP-ribose] polymerase 14 2.4.2.30 0.683
3ewr APRReplicase polyprotein 1a 3.4.22 0.677
2bfr ADP[Protein ADP-ribosylglutamate] hydrolase AF_1521 3.2.2 0.672
4b1h AR6Poly(ADP-ribose) glycohydrolase 3.2.1.143 0.667
1ng4 FADGlycine oxidase 1.4.3.19 0.652