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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ihz FK5 Peptidylprolyl isomerase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ihz FK5Peptidylprolyl isomerase / 1.462
1tco FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 1.033
1tco FK5Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 3.1.3.16 1.033
4dz2 FK5Peptidyl-prolyl cis-trans isomerase / 0.997
1qpf 858Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.987
2fke FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.984
1fkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.980
1fkj FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.936
1qpl 587Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.934
1fkd 818Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.927
1a7x FKAPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.886
2vn1 FK5Peptidylprolyl isomerase / 0.879
3o5r FK5Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.870
1bkf FK5Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.833
4odo FK5Peptidyl-prolyl cis-trans isomerase / 0.812
4qt3 RAPPeptidylprolyl isomerase / 0.794
1fkl RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.783
4dh0 MR8Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.780
1fkb RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.776
2dg4 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.757
3fap ARDPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.757
3fap ARDSerine/threonine-protein kinase mTOR 2.7.11.1 0.757
2dg3 RAPPeptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.756
1c9h RAPPeptidyl-prolyl cis-trans isomerase FKBP1B 5.2.1.8 0.754
1q6i FK5FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 5.2.1.8 0.709
4drk I63Peptidyl-prolyl cis-trans isomerase FKBP5 5.2.1.8 0.675
1fki SB1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.667
1bl4 AP1Peptidyl-prolyl cis-trans isomerase FKBP1A 5.2.1.8 0.660