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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3igv B80 Genome polyprotein 2.7.7.48

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3igv B80Genome polyprotein 2.7.7.48 1.041
3g86 T18Genome polyprotein 2.7.7.48 0.884
3h2l YAKGenome polyprotein 2.7.7.48 0.855
3h5s H5SGenome polyprotein 2.7.7.48 0.818
3co9 3MSGenome polyprotein 2.7.7.48 0.786
3h59 H59Genome polyprotein 2.7.7.48 0.786
3d5m 4MSGenome polyprotein 2.7.7.48 0.770
3e51 N35Genome polyprotein 2.7.7.48 0.768
3h98 B5PGenome polyprotein 2.7.7.48 0.761
3gyn B42Genome polyprotein 2.7.7.48 0.754
3cde N3HGenome polyprotein 2.7.7.48 0.739
3cvk N34Genome polyprotein 2.7.7.48 0.731
3h5u H5UGenome polyprotein 2.7.7.48 0.731
4mk8 28QGenome polyprotein 2.7.7.48 0.731
3cwj 321Genome polyprotein 2.7.7.48 0.723
3d28 B34Genome polyprotein 2.7.7.48 0.715
4eaw 0NQGenome polyprotein 2.7.7.48 0.661
3br9 DEYGenome polyprotein 2.7.7.48 0.656