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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3igp DT7 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.859
1if6 FBUCarbonic anhydrase 2 4.2.1.1 0.761
3n4b WWZCarbonic anhydrase 2 4.2.1.1 0.758
3n0n P9BCarbonic anhydrase 2 4.2.1.1 0.754
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.751
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.743
4ilx 1EZCarbonic anhydrase 2 4.2.1.1 0.739
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.736
1if8 SBSCarbonic anhydrase 2 4.2.1.1 0.722
1g54 FFBCarbonic anhydrase 2 4.2.1.1 0.721
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.716
3oy0 OY0Carbonic anhydrase 2 4.2.1.1 0.716
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.715
1if7 SBRCarbonic anhydrase 2 4.2.1.1 0.713
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.713
1g52 F2BCarbonic anhydrase 2 4.2.1.1 0.712
3ffp LC1Carbonic anhydrase 2 4.2.1.1 0.712
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.712
4uov AZMCarbonate dehydratase / 0.711
3ml2 SU0Carbonic anhydrase 2 4.2.1.1 0.710
1g45 FSBCarbonic anhydrase 2 4.2.1.1 0.709
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.706
4x5s AZMCarbonic anhydrase (Carbonate dehydratase) / 0.706
1kwr SG2Carbonic anhydrase 2 4.2.1.1 0.705
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.705
3qyk IE2Carbonic anhydrase 2 4.2.1.1 0.705
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.704
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.704
3oyq OYQCarbonic anhydrase 2 4.2.1.1 0.703
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.702
2nmx M25Carbonic anhydrase 1 4.2.1.1 0.701
4xiw AZMCarbonic anhydrase, alpha type / 0.699
1i9q IOFCarbonic anhydrase 2 4.2.1.1 0.698
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.697
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.694
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.694
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.693
1g4o BSBCarbonic anhydrase 2 4.2.1.1 0.692
3dcw EZLCarbonic anhydrase 2 4.2.1.1 0.691
3mzc S6ICarbonic anhydrase 2 4.2.1.1 0.691
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.690
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.690
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.689
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.688
3znc BZ1Carbonic anhydrase 4 4.2.1.1 0.687
3d8w D8WCarbonic anhydrase 2 4.2.1.1 0.686
4k0z MZMCarbonic anhydrase 2 4.2.1.1 0.686
1xpz 4TZCarbonic anhydrase 2 4.2.1.1 0.685
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.683
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.683
1kwq SG1Carbonic anhydrase 2 4.2.1.1 0.682
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.681
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.677
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.675
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.675
1dmy AZMCarbonic anhydrase 5A, mitochondrial 4.2.1.1 0.674
1i9p IOECarbonic anhydrase 2 4.2.1.1 0.674
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.673
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.673
1okm SABCarbonic anhydrase 2 4.2.1.1 0.672
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.672
1bn3 AL6Carbonic anhydrase 2 4.2.1.1 0.671
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.671
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.671
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.671
4dz7 D02Carbonic anhydrase 2 4.2.1.1 0.671
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.671
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.670
3k2f NKXCarbonic anhydrase 2 4.2.1.1 0.670
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.667
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.666
3mhi J90Carbonic anhydrase 2 4.2.1.1 0.665
1bn4 AL9Carbonic anhydrase 2 4.2.1.1 0.664
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.664
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.662
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.659
4bf1 9FKCarbonic anhydrase 2 4.2.1.1 0.659
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.655
4itp 1GDCarbonic anhydrase 2 4.2.1.1 0.655
1bnv AL7Carbonic anhydrase 2 4.2.1.1 0.654
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.654
1bzm MZMCarbonic anhydrase 1 4.2.1.1 0.653
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.652
3t85 SG7Carbonic anhydrase 2 4.2.1.1 0.651
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.651
1i8z INLCarbonic anhydrase 2 4.2.1.1 0.650
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.650