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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3igg EFQ Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.995
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.838
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.818
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.782
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.780
2a0c CK9Cyclin-dependent kinase 2 2.7.11.22 0.778
4lyn 1YGCyclin-dependent kinase 2 2.7.11.22 0.772
3dog NNNCyclin-dependent kinase 2 2.7.11.22 0.766
3ig7 EFPCyclin-dependent kinase 2 2.7.11.22 0.765
2btr U73Cyclin-dependent kinase 2 2.7.11.22 0.743
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.743
3lfq A28Cyclin-dependent kinase 2 2.7.11.22 0.738
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.735
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.723
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.705
3ezv EZVCyclin-dependent kinase 2 2.7.11.22 0.698
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.696
1g5s I17Cyclin-dependent kinase 2 2.7.11.22 0.686
2bts U32Cyclin-dependent kinase 2 2.7.11.22 0.686
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.685
2b54 D05Cyclin-dependent kinase 2 2.7.11.22 0.679
3le6 2BZCyclin-dependent kinase 2 2.7.11.22 0.679
1pxp CK8Cyclin-dependent kinase 2 2.7.11.22 0.672
3tiz 3TICyclin-dependent kinase 2 2.7.11.22 0.672
4fkv 61KCyclin-dependent kinase 2 2.7.11.22 0.672
3ddq RRCCyclin-dependent kinase 2 2.7.11.22 0.669
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.668
3qql X03Cyclin-dependent kinase 2 2.7.11.22 0.668
1oiq HDUCyclin-dependent kinase 2 2.7.11.22 0.667
1ckp PVBCyclin-dependent kinase 2 2.7.11.22 0.666
1y91 CT9Cyclin-dependent kinase 2 2.7.11.22 0.666
1pxl CK4Cyclin-dependent kinase 2 2.7.11.22 0.664
4kd1 1QKCyclin-dependent kinase 2 2.7.11.22 0.664
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.663
4nks 2M2Fibroblast growth factor receptor 1 / 0.661
2r3m SCXCyclin-dependent kinase 2 2.7.11.22 0.660
2wpa 889Cyclin-dependent kinase 2 2.7.11.22 0.659
2xnb Y8LCyclin-dependent kinase 2 2.7.11.22 0.659
3sw4 18KCyclin-dependent kinase 2 2.7.11.22 0.657
1pxo CK7Cyclin-dependent kinase 2 2.7.11.22 0.654
2r3j SCJCyclin-dependent kinase 2 2.7.11.22 0.653
2vtj LZ4Cyclin-dependent kinase 2 2.7.11.22 0.652
2vn9 GVDCalcium/calmodulin-dependent protein kinase type II subunit delta 2.7.11.17 0.651
3r8z Z63Cyclin-dependent kinase 2 2.7.11.22 0.651