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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ig7 EFP Cyclin-dependent kinase 2 2.7.11.22

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ig7 EFPCyclin-dependent kinase 2 2.7.11.22 0.930
3igg EFQCyclin-dependent kinase 2 2.7.11.22 0.765
2a0c CK9Cyclin-dependent kinase 2 2.7.11.22 0.724
4ek6 10KCyclin-dependent kinase 2 2.7.11.22 0.714
1vyw 292Cyclin-dependent kinase 2 2.7.11.22 0.708
2a4l RRCCyclin-dependent kinase 2 2.7.11.22 0.705
2b54 D05Cyclin-dependent kinase 2 2.7.11.22 0.704
4fkj 11KCyclin-dependent kinase 2 2.7.11.22 0.701
4fkg 4CKCyclin-dependent kinase 2 2.7.11.22 0.696
3r8p Z46Cyclin-dependent kinase 2 2.7.11.22 0.691
1vyz N5BCyclin-dependent kinase 2 2.7.11.22 0.687
3lfs A07Cyclin-dependent kinase 2 2.7.11.22 0.682
4fki 09KCyclin-dependent kinase 2 2.7.11.22 0.679
2btr U73Cyclin-dependent kinase 2 2.7.11.22 0.676
3pj8 404Cyclin-dependent kinase 2 2.7.11.22 0.669
3qrt X14Cyclin-dependent kinase 2 2.7.11.22 0.665
4bgq 38RCyclin-dependent kinase-like 5 2.7.11.22 0.665
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.664
3lq5 SLQCyclin-dependent kinase 9 2.7.11.22 0.663
2vn9 GVDCalcium/calmodulin-dependent protein kinase type II subunit delta 2.7.11.17 0.661
1w0x OLOCyclin-dependent kinase 2 2.7.11.22 0.659