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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ig6 438 Urokinase-type plasminogen activator 3.4.21.73

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ig6 438Urokinase-type plasminogen activator 3.4.21.73 1.200
1sqt UI3Urokinase-type plasminogen activator 3.4.21.73 0.688
4fuj 1U9Urokinase-type plasminogen activator 3.4.21.73 0.687
1u6q 745Urokinase-type plasminogen activator 3.4.21.73 0.658
1zsk 421Coagulation factor XI 3.4.21.27 0.656
4fub 4UPUrokinase-type plasminogen activator 3.4.21.73 0.656