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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iex GMP Purine nucleoside phosphorylase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iex GMPPurine nucleoside phosphorylase / 0.972
3faz NOSPurine nucleoside phosphorylase / 0.824
1a9s NOSPurine nucleoside phosphorylase 2.4.2.1 0.773
3f8w ADNPurine nucleoside phosphorylase / 0.765
1b8n IMGPurine nucleoside phosphorylase 2.4.2.1 0.751
1a9p 9DIPurine nucleoside phosphorylase 2.4.2.1 0.733
2oc9 IMHPurine nucleoside phosphorylase 2.4.2.1 0.701
1yry MSGPurine nucleoside phosphorylase 2.4.2.1 0.675
2p4s DIHAGAP005945-PA / 0.674
3bgs DIHPurine nucleoside phosphorylase 2.4.2.1 0.660
1nw4 IMHPurine nucleoside phosphorylase / 0.655
3k8q 22APurine nucleoside phosphorylase 2.4.2.1 0.652
4ear IM5Purine nucleoside phosphorylase 2.4.2.1 0.650