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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3icz PB6 Farnesyl pyrophosphate synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3icz PB6Farnesyl pyrophosphate synthase / 1.166
3egt 722Farnesyl pyrophosphate synthase / 1.007
4dem YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.990
3dyh 721Farnesyl pyrophosphate synthase / 0.986
4h5d YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.961
4h5e YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.932
4h5c YS4Farnesyl pyrophosphate synthase 2.5.1.10 0.909
4kqs RISFarnesyl pyrophosphate synthase 2.5.1.10 0.899
4q23 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.895
4l2x YL2Farnesyl pyrophosphate synthase 2.5.1.10 0.866
4nke RISFarnesyl pyrophosphate synthase 2.5.1.10 0.864
1rqj RISFarnesyl diphosphate synthase 2.5.1.10 0.840
3ldw ZOLFarnesyl pyrophosphate synthase, putative / 0.837
4dwb 0M7Farnesyl pyrophosphate synthase / 0.835
1yv5 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.810
4dxj 0M9Farnesyl pyrophosphate synthase / 0.806
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.799
4ga3 4GAFarnesyl pyrophosphate synthase 2.5.1.10 0.799
2f94 BFQFarnesyl pyrophosphate synthase 2.5.1.10 0.798
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.797
4jvj 1MVFarnesyl pyrophosphate synthase 2.5.1.10 0.757
2o1o RISPutative farnesyl pyrophosphate synthase / 0.748
1yq7 RISFarnesyl pyrophosphate synthase 2.5.1.10 0.733
3rbm B73Farnesyl pyrophosphate synthase, putative / 0.718
5erm 210Fusicoccadiene synthase 4.2.3.43 0.716
2z7h GG3Geranylgeranyl pyrophosphate synthase / 0.714
2z52 H23Geranylgeranyl pyrophosphate synthase / 0.709
3krf DSTGeranyl diphosphate synthase large subunit / 0.698
2opm NI9Farnesyl pyrophosphate synthase 2.5.1.10 0.695
2z4w 749Geranylgeranyl pyrophosphate synthase / 0.684
2e91 ZOLGeranylgeranyl pyrophosphate synthase / 0.674
3dt2 GTPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.668
3dt4 GTPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.668
1khb GCPPhosphoenolpyruvate carboxykinase, cytosolic [GTP] 4.1.1.32 0.664
3ryw K9HFarnesyl pyrophosphate synthase, putative / 0.662
2jj2 ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.660
2gqr ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.659
2py7 ATPPhosphoenolpyruvate carboxykinase (ATP) / 0.659
2jiz ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.658
3umo ATPATP-dependent 6-phosphofructokinase isozyme 2 2.7.1.11 0.657
3wqt ANPCell division protein FtsA / 0.654
2qtv GNPSmall COPII coat GTPase SAR1 3.6.5 0.650
4tl6 ANPCircadian clock protein kinase KaiC 2.7.11.1 0.650