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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3iaf TPP Benzaldehyde lyase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3iaf TPPBenzaldehyde lyase / 1.143
2uz1 TPPBenzaldehyde lyase / 0.867
3d7k D7KBenzaldehyde lyase / 0.822
3iae D7KBenzaldehyde lyase / 0.777
1po7 TZDBenzoylformate decarboxylase 4.1.1.7 0.768
2ag0 TPPBenzaldehyde lyase / 0.745
2ag1 TPPBenzaldehyde lyase / 0.731
5exd TPPOxalate oxidoreductase subunit alpha / 0.724
5exd TPPOxalate oxidoreductase subunit beta / 0.724
4jub TPPBenzoylformate decarboxylase 4.1.1.7 0.715
4ju9 TZDBenzoylformate decarboxylase 4.1.1.7 0.707
5c4i TPPOxalate oxidoreductase subunit alpha / 0.705
5c4i TPPOxalate oxidoreductase subunit beta / 0.705
1y9d TPPPyruvate oxidase 1.2.3.3 0.697
2v3w TPPBenzoylformate decarboxylase 4.1.1.7 0.687
4qel TZDBenzoylformate decarboxylase 4.1.1.7 0.679
1bfd TPPBenzoylformate decarboxylase 4.1.1.7 0.678
2q5q TPWIndole-3-pyruvate decarboxylase 4.1.1.74 0.676
4qpz TPPBenzaldehyde lyase / 0.670
5ahk TPPAcetolactate synthase II, large subunit / 0.669
2pan TDPGlyoxylate carboligase 4.1.1.47 0.663
3fzn D7KBenzoylformate decarboxylase 4.1.1.7 0.663
4juf TPPBenzoylformate decarboxylase 4.1.1.7 0.662
1mcz TDPBenzoylformate decarboxylase 4.1.1.7 0.661
4jd5 TZDBenzoylformate decarboxylase 4.1.1.7 0.660
1pow TPPPyruvate oxidase 1.2.3.3 0.659
1pox TPPPyruvate oxidase 1.2.3.3 0.658
4ju8 TZDBenzoylformate decarboxylase 4.1.1.7 0.658
1jsc TPPAcetolactate synthase catalytic subunit, mitochondrial 2.2.1.6 0.656
4gg1 TZDBenzoylformate decarboxylase 4.1.1.7 0.656
2fwn TDPBenzoylformate decarboxylase 4.1.1.7 0.653
4mzx TZDBenzoylformate decarboxylase 4.1.1.7 0.651
4mq5 TPPBenzoylformate decarboxylase 4.1.1.7 0.650