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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i9j NFD ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3i9j NFDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 1.013
3i9j AVVADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.752
3zwo G2QADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.735
3dzi RGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.719
3zwx AV1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.717
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.715
3ghh 2NFCD38 molecule / 0.708
2o3u NGDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.694
3dzj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.687
3rno NAPNAD(P)H-hydrate epimerase 5.1.99.6 0.684
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.682
1isj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 3.2.2.6 0.674
3i9k NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.673
4iif CTSBeta-glucosidase 1 3.2.1.21 0.666
3phj DHKShikimate dehydrogenase (NADP(+)) / 0.658
4kxl 6C62'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.650