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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3i59 N6R CRP-like cAMP-activated global transcriptional regulator

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3i59 N6RCRP-like cAMP-activated global transcriptional regulator / 1.304
4hbn CMPPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 / 0.784
3i59 N6SCRP-like cAMP-activated global transcriptional regulator / 0.775
3u0z CMPPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 / 0.743
2cgp CMPcAMP-activated global transcriptional regulator CRP / 0.729
4ku7 PCGcGMP-dependent protein kinase 1 2.7.11.12 0.724
4i0b CMPcAMP-activated global transcriptional regulator CRP / 0.722
3ogj CMPcGMP-dependent protein kinase 1 2.7.11.12 0.715
4qx5 CMPcGMP-dependent protein kinase 1 2.7.11.12 0.711
4hzf CMPcAMP-activated global transcriptional regulator CRP / 0.705
3rou CMPcAMP-activated global transcriptional regulator CRP / 0.704
4i02 CMPcAMP-activated global transcriptional regulator CRP / 0.702
1vp6 CMPCyclic nucleotide-gated potassium channel mll3241 / 0.700
3otf CMPPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 / 0.700
3r6s CMPCRP-like cAMP-activated global transcriptional regulator / 0.694
4d7s PCGUncharacterized protein / 0.693
4ft8 CMPcAMP-activated global transcriptional regulator CRP / 0.692
4ev0 CMPCyclic AMP receptor protein / 0.690
4i09 CMPcAMP-activated global transcriptional regulator CRP / 0.688
2ptm CMPHyperpolarization-activated (Ih) channel / 0.687
2oz6 CMPCyclic AMP receptor-like protein / 0.685
1i6x CMPcAMP-activated global transcriptional regulator CRP / 0.684
4d7t CMPUncharacterized protein / 0.684
1zrd CMPcAMP-activated global transcriptional regulator CRP / 0.677
3n4m CMPcAMP-activated global transcriptional regulator CRP / 0.670
1q3e PCGPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 / 0.669
3bpz CMPPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 / 0.659
3mzh CMPCRP-like cAMP-activated global transcriptional regulator / 0.659
3ocp CMPcGMP-dependent protein kinase 1 2.7.11.12 0.657
3rpq CMPcAMP-activated global transcriptional regulator CRP / 0.656
3u11 CMPPotassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 / 0.656
5c8w PCGcGMP-dependent protein kinase 2 2.7.11.12 0.651