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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3hzi ATP Serine/threonine-protein kinase toxin HipA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3hzi ATPSerine/threonine-protein kinase toxin HipA / 1.077
3tpt ADPSerine/threonine-protein kinase toxin HipA / 0.710
3dnt ATPSerine/threonine-protein kinase toxin HipA / 0.695
1w2c ANPInositol-trisphosphate 3-kinase A 2.7.1.127 0.687
4ej7 ATPAminoglycoside 3'-phosphotransferase AphA1-IAB / 0.686
1q99 ANPSerine/threonine-protein kinase SKY1 2.7.11.1 0.673
4b8l A0PAurora kinase B-A 2.7.11.1 0.664
4eht ADP2-hydroxyisocaproyl-CoA dehydratase activator / 0.656
1c0f ATPMajor actin / 0.653
3nsz ANPCasein kinase II subunit alpha 2.7.11.1 0.651
4pki ATPActin, alpha skeletal muscle / 0.651
4k41 ATPActin, alpha skeletal muscle / 0.650